RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 ZDHHC3Q9NYG2 299 aa6.24□□□□□ -1.41
CD44-225ENST00000527326 NKX1-2Q9UD57 310 aaPredicted RBP6.24□□□□□ -1.41
CD44-225ENST00000527326 HERC5Q9UII4 1024 aaKnown RBP6.24□□□□□ -1.41
CD44-225ENST00000527326 HPSEQ9Y251 543 aa6.24□□□□□ -1.41
CD44-225ENST00000527326 USP20Q9Y2K6 914 aa6.24□□□□□ -1.41
CD44-225ENST00000527326 ARL2BPQ9Y2Y0 163 aa6.24□□□□□ -1.41
CD44-225ENST00000527326 HBS1LQ9Y450 684 aaKnown RBP6.24□□□□□ -1.41
CD44-225ENST00000527326 RBM8AQ9Y5S9 174 aaKnown RBP6.24□□□□□ -1.41
CD44-225ENST00000527326 EPN1Q9Y6I3 576 aaPredicted RBP6.24□□□□□ -1.41
CD44-225ENST00000527326 GRID2IPA4D2P6 1211 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 H0YGN5 161 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ENC1O14682 589 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 SNX3O60493 162 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 DIAPH1O60610 1272 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 SRGAP2O75044 1071 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 GLRX3O76003 335 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 UNC5CO95185 931 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 FGFR1OPO95684 399 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 ZBED1O96006 694 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 A1BGP04217 495 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 GYPCP04921 128 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 PIM1P11309 404 aaPredicted RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 CYP2C9P11712 490 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 KRT4P19013 534 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ATP2B4P23634 1241 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 CTNNA1P35221 906 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 CCNFP41002 786 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 LIFRP42702 1097 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 RASSF2P50749 326 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ZNF132P52740 706 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 RTP1P59025 263 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 RPL26P61254 145 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 RELAQ04206 551 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 AP1B1Q10567 949 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 GRIN2CQ14957 1233 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 CCDC6Q16204 474 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ARL13BQ3SXY8 428 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.23□□□□□ -1.41
CD44-225ENST00000527326 SPDYAQ5MJ70 313 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 SPATA1Q5VX52 437 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 KAZNQ674X7 775 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 LINC00114Q6XXX2 140 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 NEK10Q6ZWH5 1172 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 MAEAQ7L5Y9 396 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ZBED8Q8IZ13 594 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 TSPYL6Q8N831 410 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 SPERTQ8NA61 448 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 VPS37AQ8NEZ2 397 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 PLEKHO2Q8TD55 490 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ATXN2LQ8WWM7 1075 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 STARD8Q92502 1023 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 MAP4K1Q92918 833 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 EVI5LQ96CN4 794 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 DGCR14Q96DF8 476 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 ZNF594Q96JF6 807 aaPredicted RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 SEZ6LQ9BYH1 1024 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 NDEL1Q9GZM8 345 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 STMN4Q9H169 189 aaPredicted RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 ASCC2Q9H1I8 757 aaPredicted RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 METTL14Q9HCE5 456 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 TRPC7Q9HCX4 862 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 GINM1Q9NU53 330 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ABCF3Q9NUQ8 709 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ZNF358Q9NW07 568 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 FKBP14Q9NWM8 211 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 AIPL1Q9NZN9 384 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 SEPT10Q9P0V9 454 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 THEGQ9P2T0 379 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ADD3Q9UEY8 706 aaKnown RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 ZNHIT2Q9UHR6 403 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 GTF3C4Q9UKN8 822 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 PRR12Q9ULL5 1215 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 ZMYND8Q9ULU4 1186 aaPredicted RBP6.23□□□□□ -1.41
CD44-225ENST00000527326 NFU1Q9UMS0 254 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 KIAA1024Q9UPX6 916 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 PPME1Q9Y570 386 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 HEY1Q9Y5J3 304 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 NFS1Q9Y697 457 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 EID1Q9Y6B2 187 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 IKBKGQ9Y6K9 419 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 CAPN6Q9Y6Q1 641 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 TRPM2O94759 1503 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 SETBP1Q9Y6X0 1596 aa6.23□□□□□ -1.41
CD44-225ENST00000527326 PTPDC1A2A3K4 754 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 KRBA1A5PL33 1030 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 BOLA2-SMG1P6H3BVE0 249 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 KMOO15229 486 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 IDH3BO43837 385 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 PPP6R2O75170 966 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 DKK1O94907 266 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 HEXIM1O94992 359 aaKnown RBP6.22□□□□□ -1.41
CD44-225ENST00000527326 OXSR1O95747 527 aaPredicted RBP6.22□□□□□ -1.41
CD44-225ENST00000527326 APOEP02649 317 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 CYP1A1P04798 512 aaPredicted RBP6.22□□□□□ -1.41
CD44-225ENST00000527326 SPATA31D3P0C874 917 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 HSPA1AP0DMV8 641 aaKnown RBP6.22□□□□□ -1.41
CD44-225ENST00000527326 HSPA1BP0DMV9 641 aaKnown RBP6.22□□□□□ -1.41
CD44-225ENST00000527326 COL8A1P27658 744 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 ADH6P28332 368 aa6.22□□□□□ -1.41
CD44-225ENST00000527326 TKTP29401 623 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms