RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 OR14C36Q8NHC7 312 aa3.32□□□□□ -1.88
CD44-216ENST00000525293 RSAD2Q8WXG1 361 aa3.32□□□□□ -1.88
CD44-216ENST00000525293 LARP4BQ92615 738 aaKnown RBP3.32□□□□□ -1.88
CD44-216ENST00000525293 EAF2Q96CJ1 260 aaPredicted RBP3.32□□□□□ -1.88
CD44-216ENST00000525293 IL17RAQ96F46 866 aa3.32□□□□□ -1.88
CD44-216ENST00000525293 WNT8AQ9H1J5 351 aa3.32□□□□□ -1.88
CD44-216ENST00000525293 SLKQ9H2G2 1235 aaPredicted RBP3.32□□□□□ -1.88
CD44-216ENST00000525293 KCTD10Q9H3F6 313 aa3.32□□□□□ -1.88
CD44-216ENST00000525293 CAAP1Q9H8G2 361 aa3.32□□□□□ -1.88
CD44-216ENST00000525293 EDARQ9UNE0 448 aa3.32□□□□□ -1.88
CD44-216ENST00000525293 TMA7Q9Y2S6 64 aaKnown RBP3.32□□□□□ -1.88
CD44-216ENST00000525293 SUV39H1O43463 412 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 PRAMEF4O60810 478 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 DNAJC6O75061 913 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 ULK1O75385 1050 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 PEX11BO96011 259 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 GZMKP49863 264 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 PTTG1IPP53801 180 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 SESN3P58005 492 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 DCAF17Q5H9S7 520 aaPredicted RBP3.31□□□□□ -1.88
CD44-216ENST00000525293 SDE2Q6IQ49 451 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 ABHD15Q6UXT9 468 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 HTR3DQ70Z44 454 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 ZNF627Q7L945 461 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 FAM83AQ86UY5 434 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 XYLT1Q86Y38 959 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 CMIPQ8IY22 773 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 GLB1L3Q8NCI6 653 aaPredicted RBP3.31□□□□□ -1.88
CD44-216ENST00000525293 CPT1CQ8TCG5 803 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 SLC25A43Q8WUT9 341 aaPredicted RBP3.31□□□□□ -1.88
CD44-216ENST00000525293 CHFRQ96EP1 664 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 MENTQ9BUN1 341 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 LSM14BQ9BX40 385 aaKnown RBP3.31□□□□□ -1.88
CD44-216ENST00000525293 NRDE2Q9H7Z3 1164 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 GPRC5BQ9NZH0 403 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 TRPS1Q9UHF7 1281 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 SORCS3Q9UPU3 1222 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 HDAC5Q9UQL6 1122 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 CDY2AQ9Y6F7 541 aa3.31□□□□□ -1.88
CD44-216ENST00000525293 ZMYM3Q14202 1370 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 GOLGA8AA7E2F4 631 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 GRXCR1A8MXD5 290 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 TMEM127O75204 238 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 SCAF4O95104 1147 aaKnown RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 GYPEP15421 78 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 CANXP27824 592 aaKnown RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 SOX5P35711 763 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 MASP1P48740 699 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 WNT3AP56704 352 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 CDK17Q00537 523 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 APBA1Q02410 837 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 DPTQ07507 201 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 FSCN1Q16658 493 aaKnown RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 CT47A1Q5JQC4 288 aaPredicted RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 NAIF1Q69YI7 327 aaPredicted RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 ZNF276Q8N554 614 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 AMER2Q8N7J2 671 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 TGFBRAP1Q8WUH2 860 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 CHAC2Q8WUX2 184 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 SNX33Q8WV41 574 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 HAS1Q92839 578 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 FAM193BQ96PV7 902 aaPredicted RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 CEP89Q96ST8 783 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 CDC5LQ99459 802 aaKnown RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 PDCD2LQ9BRP1 358 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 CPEB1Q9BZB8 566 aaKnown RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 IKZF4Q9H2S9 585 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 SLITRK6Q9H5Y7 841 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 DPP7Q9UHL4 492 aa3.3□□□□□ -1.88
CD44-216ENST00000525293 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.3□□□□□ -1.88
CD44-216ENST00000525293 APOBEC2Q9Y235 224 aaKnown RBP3.3□□□□□ -1.88
CD44-216ENST00000525293 SHROOM4Q9ULL8 1493 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 WDR33Q9C0J8 1336 aaKnown RBP3.29□□□□□ -1.88
CD44-216ENST00000525293 A0A087X1B8 175 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 ITGA10O75578 1167 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 RECQL4O94761 1208 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 HSP90B1P14625 803 aaKnown RBP3.29□□□□□ -1.88
CD44-216ENST00000525293 ENPP1P22413 925 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 NR4A1P22736 598 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 CTSSP25774 331 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 PTGS2P35354 604 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 INHBCP55103 352 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 SCAND1P57086 179 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 CCT2P78371 535 aaKnown RBP3.29□□□□□ -1.88
CD44-216ENST00000525293 IRX6P78412 446 aaPredicted RBP3.29□□□□□ -1.88
CD44-216ENST00000525293 MEF2AQ02078 507 aaPredicted RBP3.29□□□□□ -1.88
CD44-216ENST00000525293 VPS72Q15906 364 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.29□□□□□ -1.88
CD44-216ENST00000525293 C19orf54Q5BKX5 351 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 METTL24Q5JXM2 366 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 ANKS6Q68DC2 871 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 IQSEC1Q6DN90 963 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 DOK3Q7L591 496 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 MRGPREQ86SM8 312 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 LDLRAD3Q86YD5 345 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 LILRA3Q8N6C8 439 aaPredicted RBP3.29□□□□□ -1.88
CD44-216ENST00000525293 OR52N2Q8NGI0 321 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 MDM1Q8TC05 714 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 ACAP3Q96P50 834 aa3.29□□□□□ -1.88
CD44-216ENST00000525293 NDC1Q9BTX1 674 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms