RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TTLL13PA6NNM8 815 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 K7ERI5 159 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 ENPP3O14638 875 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 B4GALT5O43286 388 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 AMHP03971 560 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 DEFB103AP81534 67 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 NCBP1Q09161 790 aaKnown RBP16.81■□□□□ 0.28
LSM1-203ENST00000520755 AMHR2Q16671 573 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 TMEM132AQ24JP5 1023 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 L1TD1Q5T7N2 865 aaKnown RBP16.81■□□□□ 0.28
LSM1-203ENST00000520755 RASIP1Q5U651 963 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 RTN4RL1Q86UN2 441 aaPredicted RBP16.81■□□□□ 0.28
LSM1-203ENST00000520755 MAP4K3Q8IVH8 894 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 MYOCDQ8IZQ8 938 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 GUF1Q8N442 669 aaKnown RBP16.81■□□□□ 0.28
LSM1-203ENST00000520755 ZNF507Q8TCN5 953 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 HVCN1Q96D96 273 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 CPB2Q96IY4 423 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 MED15Q96RN5 788 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 TSPYL2Q9H2G4 693 aaPredicted RBP16.81■□□□□ 0.28
LSM1-203ENST00000520755 FZD8Q9H461 694 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 TMEM134Q9H6X4 195 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 TBX20Q9UMR3 447 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 USP20Q9Y2K6 914 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 ARF4P18085 180 aaPredicted RBP16.8■□□□□ 0.28
LSM1-203ENST00000520755 PMS1P54277 932 aaKnown RBP16.8■□□□□ 0.28
LSM1-203ENST00000520755 PRPF4BQ13523 1007 aaKnown RBP16.8■□□□□ 0.28
LSM1-203ENST00000520755 ALCAMQ13740 583 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 DSC3Q14574 896 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 PCBP1Q15365 356 aaKnown RBP eCLIP16.8■□□□□ 0.28
LSM1-203ENST00000520755 ZCWPW2Q504Y3 356 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 TWF2Q6IBS0 349 aaKnown RBP16.8■□□□□ 0.28
LSM1-203ENST00000520755 SLC39A4Q6P5W5 647 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 LRSAM1Q6UWE0 723 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 TMCO2Q7Z6W1 182 aaPredicted RBP16.8■□□□□ 0.28
LSM1-203ENST00000520755 NELFCDQ8IXH7 590 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 SLC17A8Q8NDX2 589 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 PRIMPOLQ96LW4 560 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 DNAJC25Q9H1X3 360 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 KCTD10Q9H3F6 313 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 CHST12Q9NRB3 414 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 ANO10Q9NW15 660 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 TTC3P53804 2025 aa16.8■□□□□ 0.28
LSM1-203ENST00000520755 CNTNAP2Q9UHC6 1331 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 RANBP2P49792 3224 aaKnown RBP16.79■□□□□ 0.28
LSM1-203ENST00000520755 TISP43B9A030 160 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 H0YCG3 227 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 ACKR2O00590 384 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 UPP2O95045 317 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 CCDC192P0DO97 292 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 HOXA11P31270 313 aaPredicted RBP16.79■□□□□ 0.28
LSM1-203ENST00000520755 STRN3Q13033 797 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 FAM187BQ17R55 369 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 ANO6Q4KMQ2 910 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 FAM117BQ6P1L5 589 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 CDR2LQ86X02 465 aaPredicted RBP16.79■□□□□ 0.28
LSM1-203ENST00000520755 MLKLQ8NB16 471 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 SLC9A7Q96T83 725 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 SEMA6BQ9H3T3 888 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 RGS18Q9NS28 235 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 C1orf112Q9NSG2 853 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 CTNND2Q9UQB3 1225 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 PCDHB13Q9Y5F0 798 aa16.79■□□□□ 0.28
LSM1-203ENST00000520755 A0A1W2PPC1 479 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 TRIM49BA6NDI0 452 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 GRXCR1A8MXD5 290 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 TGFB1I1O43294 461 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 PIGRP01833 764 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 ATP2A2P16615 1042 aaKnown RBP16.78■□□□□ 0.28
LSM1-203ENST00000520755 AXLP30530 894 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 FAM109BQ6ICB4 259 aaPredicted RBP16.78■□□□□ 0.28
LSM1-203ENST00000520755 KLHL10Q6JEL2 608 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 NOTUMQ6P988 496 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 SLC24A5Q71RS6 500 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 ACCSQ96QU6 501 aa16.78■□□□□ 0.28
LSM1-203ENST00000520755 GTPBP4Q9BZE4 634 aaKnown RBP16.78■□□□□ 0.28
LSM1-203ENST00000520755 C9IYK1 514 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 ABLIM1O14639 778 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 SCP2P22307 547 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 KNOP1Q1ED39 458 aaKnown RBP16.77■□□□□ 0.28
LSM1-203ENST00000520755 CENPPQ6IPU0 288 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 FAM43BQ6ZT52 329 aaPredicted RBP16.77■□□□□ 0.28
LSM1-203ENST00000520755 STXBP4Q6ZWJ1 553 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 RNF169Q8NCN4 708 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 NELFBQ8WX92 580 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 BICD1Q96G01 975 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 TARS2Q9BW92 718 aaKnown RBP16.77■□□□□ 0.28
LSM1-203ENST00000520755 MRPL4Q9BYD3 311 aaKnown RBP16.77■□□□□ 0.28
LSM1-203ENST00000520755 FAM105AQ9NUU6 356 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 LRFN2Q9ULH4 789 aa16.77■□□□□ 0.28
LSM1-203ENST00000520755 FNDC1Q4ZHG4 1894 aaPredicted RBP16.76■□□□□ 0.27
LSM1-203ENST00000520755 A0A1B0GUA9 196 aa16.76■□□□□ 0.27
LSM1-203ENST00000520755 ANKRD63C9JTQ0 380 aa16.76■□□□□ 0.27
LSM1-203ENST00000520755 N4BP3O15049 544 aa16.76■□□□□ 0.27
LSM1-203ENST00000520755 CCNE1P24864 410 aa16.76■□□□□ 0.27
LSM1-203ENST00000520755 PAK1Q13153 545 aa16.76■□□□□ 0.27
LSM1-203ENST00000520755 UBXN11Q5T124 520 aa16.76■□□□□ 0.27
LSM1-203ENST00000520755 ATF7IP2Q5U623 682 aa16.76■□□□□ 0.27
LSM1-203ENST00000520755 TTI2Q6NXR4 508 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms