RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 AKT3Q9Y243 479 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 FOXN1O15353 648 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 KRT17Q04695 432 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 PDXDC1Q6P996 788 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 TMED8Q6PL24 325 aaPredicted RBP14.09□□□□□ -0.15
TCOF1-214ENST00000515035 ENAHQ8N8S7 591 aaPredicted RBP14.09□□□□□ -0.15
TCOF1-214ENST00000515035 PARD3BQ8TEW8 1205 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 SH3GLB2Q9NR46 395 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 AURKCQ9UQB9 309 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 PITPNM2Q9BZ72 1349 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 CDH16O75309 829 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 FAM107AO95990 144 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 IFNA8P32881 189 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 SURF1Q15526 300 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 TRIP10Q15642 601 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 SLC44A4Q53GD3 710 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 KIAA1755Q5JYT7 1200 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 DPP9Q86TI2 863 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 SGSM3Q96HU1 749 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 CHP1Q99653 195 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 RANBP17Q9H2T7 1088 aaKnown RBP14.09□□□□□ -0.15
TCOF1-214ENST00000515035 AXIN2Q9Y2T1 843 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 CRB1P82279 1406 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 SPATA31A6Q5VVP1 1343 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 COL15A1P39059 1388 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 CLTCL1P53675 1640 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 TYW5A2RUC4 315 aaKnown RBP14.09□□□□□ -0.15
TCOF1-214ENST00000515035 CCT8L1PA6NM43 557 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 TYK2P29597 1187 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 PEX3P56589 373 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 MAPRE2Q15555 327 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 ARL13BQ3SXY8 428 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 MDH1BQ5I0G3 518 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 SHC4Q6S5L8 630 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 XXYLT1Q8NBI6 393 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 MTBPQ96DY7 904 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 MSTO1Q9BUK6 570 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 COG4Q9H9E3 785 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 NPHS2Q9NP85 383 aa14.09□□□□□ -0.15
TCOF1-214ENST00000515035 KRT75O95678 551 aa14.08□□□□□ -0.15
TCOF1-214ENST00000515035 CDR2LQ86X02 465 aaPredicted RBP14.08□□□□□ -0.15
TCOF1-214ENST00000515035 OXER1Q8TDS5 423 aa14.08□□□□□ -0.15
TCOF1-214ENST00000515035 ADNPQ9H2P0 1102 aa14.08□□□□□ -0.15
TCOF1-214ENST00000515035 CD248Q9HCU0 757 aa14.08□□□□□ -0.15
TCOF1-214ENST00000515035 ABCA9Q8IUA7 1624 aa14.08□□□□□ -0.15
TCOF1-214ENST00000515035 CALB1P05937 261 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 USP17L8P0C7I0 530 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 BMP3P12645 472 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 MARK3P27448 753 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 PSMD7P51665 324 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 COASYQ13057 564 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 MIS18BP1Q6P0N0 1132 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 AGR3Q8TD06 166 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 DYNLL2Q96FJ2 89 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 MS4A14Q96JA4 679 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 ASPSCR1Q9BZE9 553 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 ADD3Q9UEY8 706 aaKnown RBP14.08□□□□□ -0.16
TCOF1-214ENST00000515035 PFASO15067 1338 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 MYO3BQ8WXR4 1341 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 TMEM247A6NEH6 219 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 UBTFL6P0CB48 400 aaPredicted RBP14.08□□□□□ -0.16
TCOF1-214ENST00000515035 RASGRP2Q7LDG7 609 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 EXOC8Q8IYI6 725 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 OR2W6PQ8NHA6 318 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 EDEM3Q9BZQ6 932 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 NOD2Q9HC29 1040 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 ATP11BQ9Y2G3 1177 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 K7ERI5 159 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 CARSP49589 748 aaKnown RBP14.08□□□□□ -0.16
TCOF1-214ENST00000515035 MAP3K7CLP57077 242 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 AGBL2Q5U5Z8 902 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 RHOT1Q8IXI2 618 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 PIGOQ8TEQ8 1089 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 SNRNP27Q8WVK2 155 aaKnown RBP14.08□□□□□ -0.16
TCOF1-214ENST00000515035 EME1Q96AY2 570 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 BRIP1Q9BX63 1249 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 LCMT1Q9UIC8 334 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 GOLGA8RI6L899 631 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 SNX2O60749 519 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 NSUN2Q08J23 767 aaKnown RBP eCLIP14.08□□□□□ -0.16
TCOF1-214ENST00000515035 BTNL9Q6UXG8 535 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 ADCK1Q86TW2 530 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 FOXP4Q8IVH2 680 aaPredicted RBP14.08□□□□□ -0.16
TCOF1-214ENST00000515035 GUF1Q8N442 669 aaKnown RBP14.08□□□□□ -0.16
TCOF1-214ENST00000515035 TSSK1BQ9BXA7 367 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 ASNSD1Q9NWL6 643 aa14.08□□□□□ -0.16
TCOF1-214ENST00000515035 TRIM60Q495X7 471 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 LRRC8BQ6P9F7 803 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 TMEM270Q6UE05 265 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 ARMCX2Q7L311 632 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 TTC8Q8TAM2 541 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 RAD54LQ92698 747 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 PBXIP1Q96AQ6 731 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 ZIM3Q96PE6 472 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 CCDC134Q9H6E4 229 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 PIH1D3Q9NQM4 214 aaKnown RBP14.07□□□□□ -0.16
TCOF1-214ENST00000515035 RHBDL2Q9NX52 303 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 USP31Q70CQ4 1352 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 PNMA6FA0A0J9YX94 578 aa14.07□□□□□ -0.16
TCOF1-214ENST00000515035 C21orf2O43822 256 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms