RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 KCNA2P16389 499 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 TBC1D10BQ4KMP7 808 aaPredicted RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 PLA2G4FQ68DD2 849 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 SAMD7Q7Z3H4 446 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 UBL4BQ8N7F7 174 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 TSEN2Q8NCE0 465 aaKnown RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 PARD3BQ8TEW8 1205 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 KCNN1Q92952 543 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 IFT74Q96LB3 600 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 NT5C1BQ96P26 610 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 RPS6KC1Q96S38 1066 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 WRNIP1Q96S55 665 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 HINFPQ9BQA5 517 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 TEX13BQ9BXU2 312 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 THAP2Q9H0W7 228 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 ACAD9Q9H845 621 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 OSGEPQ9NPF4 335 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 GPRC5CQ9NQ84 441 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 HOXC10Q9NYD6 342 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 GABBR1Q9UBS5 961 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 IGSF9BQ9UPX0 1349 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 TISP43B9A030 160 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 DDX3YO15523 660 aaKnown RBP16.03■□□□□ 0.16
NUP54-217ENST00000514987 DGKZQ13574 1117 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 MIS18BP1Q6P0N0 1132 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 LRIG3Q6UXM1 1119 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 DEFB132Q7Z7B7 95 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 RPUSD2Q8IZ73 545 aaKnown RBP16.03■□□□□ 0.16
NUP54-217ENST00000514987 RIN2Q8WYP3 895 aaPredicted RBP16.03■□□□□ 0.16
NUP54-217ENST00000514987 SHC3Q92529 594 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 ZIM3Q96PE6 472 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 RAB17Q9H0T7 212 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 GOLPH3Q9H4A6 298 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 JPH1Q9HDC5 661 aaPredicted RBP16.03■□□□□ 0.16
NUP54-217ENST00000514987 FAM114A2Q9NRY5 505 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 SLC9A2Q9UBY0 812 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 ZNF214Q9UL59 606 aaPredicted RBP16.03■□□□□ 0.16
NUP54-217ENST00000514987 RIPK3Q9Y572 518 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 ARID2Q68CP9 1835 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 RLFQ13129 1914 aa16.03■□□□□ 0.16
NUP54-217ENST00000514987 SYNGAP1Q96PV0 1343 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 WDR81Q562E7 1941 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 SPATA31C2B4DYI2 1134 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 ANKRD63C9JTQ0 380 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 TULP1O00294 542 aaPredicted RBP16.02■□□□□ 0.16
NUP54-217ENST00000514987 GGPS1O95749 300 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 ADRB2P07550 413 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 ADSSP30520 456 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 ERVK-9P63128 1117 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 MTMR3Q13615 1198 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 HLTFQ14527 1009 aaKnown RBP eCLIP16.02■□□□□ 0.16
NUP54-217ENST00000514987 NOL9Q5SY16 702 aaKnown RBP16.02■□□□□ 0.16
NUP54-217ENST00000514987 CATSPERGQ6ZRH7 1159 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 DNAAF5Q86Y56 855 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 FBXL13Q8NEE6 735 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 PLEKHO2Q8TD55 490 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 SEC14L1Q92503 715 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 ARHGEF26Q96DR7 871 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 AP1M1Q9BXS5 423 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 ATP6V0A4Q9HBG4 840 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 PDLIM7Q9NR12 457 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.02■□□□□ 0.16
NUP54-217ENST00000514987 CYP39A1Q9NYL5 469 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 CTTNBP2NLQ9P2B4 639 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 NOCTQ9UK39 431 aaKnown RBP16.02■□□□□ 0.16
NUP54-217ENST00000514987 SCAF8Q9UPN6 1271 aaKnown RBP16.02■□□□□ 0.16
NUP54-217ENST00000514987 UTP11Q9Y3A2 253 aaKnown RBP16.02■□□□□ 0.16
NUP54-217ENST00000514987 GJA3Q9Y6H8 435 aa16.02■□□□□ 0.16
NUP54-217ENST00000514987 COL11A1P12107 1806 aaPredicted RBP16.02■□□□□ 0.15
NUP54-217ENST00000514987 ESYT3A0FGR9 886 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 TMEM150BA6NC51 233 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 FAM187AA6NFU0 413 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 STBD1O95210 358 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 PTENP60484 403 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 SKOR1P84550 965 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 CYP24A1Q07973 514 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 XKR3Q5GH77 459 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 CBWD2Q8IUF1 395 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 GPD1LQ8N335 351 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 PPM1KQ8N3J5 372 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 EPS8L1Q8TE68 723 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 SLC20A1Q8WUM9 679 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 POMGNT1Q8WZA1 660 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 RNPC3Q96LT9 517 aaKnown RBP16.01■□□□□ 0.15
NUP54-217ENST00000514987 MTFR1LQ9H019 292 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 WNT8AQ9H1J5 351 aa16.01■□□□□ 0.15
NUP54-217ENST00000514987 GOLGA8IPA6NC78 632 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ZSCAN5CA6NGD5 496 aaPredicted RBP16■□□□□ 0.15
NUP54-217ENST00000514987 GOLGA8JA6NMD2 632 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ZNF862O60290 1169 aa16■□□□□ 0.15
NUP54-217ENST00000514987 FGGP02679 453 aa16■□□□□ 0.15
NUP54-217ENST00000514987 FAM153BP0C7A2 387 aa16■□□□□ 0.15
NUP54-217ENST00000514987 USP8P40818 1118 aa16■□□□□ 0.15
NUP54-217ENST00000514987 HMGCS2P54868 508 aa16■□□□□ 0.15
NUP54-217ENST00000514987 MAP2K1Q02750 393 aaPredicted RBP16■□□□□ 0.15
NUP54-217ENST00000514987 DHX34Q14147 1143 aaKnown RBP16■□□□□ 0.15
NUP54-217ENST00000514987 TMEM132BQ14DG7 1078 aa16■□□□□ 0.15
NUP54-217ENST00000514987 FAM153CQ494X1 144 aa16■□□□□ 0.15
NUP54-217ENST00000514987 SPDYCQ5MJ68 293 aa16■□□□□ 0.15
NUP54-217ENST00000514987 EMC10Q5UCC4 262 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms