RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RGS20O76081 388 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 MMP1P03956 469 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TRAPPC10P48553 1259 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ADARP55265 1226 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIP10Q15642 601 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 SPDYE2Q495Y8 402 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 COG1Q8WTW3 980 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP6V1E2Q96A05 226 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TTC17Q96AE7 1141 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 CCDC17Q96LX7 622 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PUS3Q9BZE2 481 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 CLEC4MQ9H2X3 399 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 NRBP2Q9NSY0 501 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ADA2Q9NZK5 511 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 GCNT4Q9P109 453 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 HESX1Q9UBX0 185 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 HPS5Q9UPZ3 1129 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 GDAQ9Y2T3 454 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 RASA4BC9J798 803 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 RASA4O43374 803 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 SKAP2O75563 359 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PALMO75781 387 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 HSPA4LO95757 839 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP6V1B1P15313 513 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PSMC2P35998 433 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PHKA1P46020 1223 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM71Q2Q1W2 868 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 FASTKD5Q7L8L6 764 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PLA2G4DQ86XP0 818 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP8B4Q8TF62 1192 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 NCLNQ969V3 563 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TGS1Q96RS0 853 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ANO3Q9BYT9 981 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 NRDE2Q9H7Z3 1164 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 CYP4F11Q9HBI6 524 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 OVOS2A0A0G2JMS6 1433 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 OVOS2A0A0J9YW53 1432 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 OVOS2Q6IE36 1432 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 CCDC78A2IDD5 438 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 SNPHO15079 494 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 DDAH1O94760 285 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 VIL1P09327 827 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PLS3P13797 630 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 NFKBIAP25963 317 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TUBA3CQ13748 450 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 RFX8Q6ZV50 586 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 KRT26Q7Z3Y9 468 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 MTBPQ96DY7 904 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 MTRQ99707 1265 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TEX12Q9BXU0 123 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 CALN1Q9BXU9 219 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PCIF1Q9H4Z3 704 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 POLD4Q9HCU8 107 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 DISC1Q9NRI5 854 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 GINM1Q9NU53 330 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 NSMCE4AQ9NXX6 385 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM17Q9Y577 477 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 SRPRBQ9Y5M8 271 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 IFNA8P32881 189 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 IGBP1P78318 339 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 C16orf72Q14CZ0 275 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 HIF1AQ16665 826 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ARHGEF16Q5VV41 709 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 ACAD11Q709F0 780 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PATL1Q86TB9 770 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 EME1Q96AY2 570 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 SUGCTQ9HAC7 445 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 FAM8A1Q9UBU6 413 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PCDHB4Q9Y5E5 795 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 PCDHA1Q9Y5I3 950 aa9.24□□□□□ -0.93
LIMCH1-218ENST00000513024 HNRNPDLO14979 420 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 P4HA2O15460 535 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 KRT37O76014 449 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 ANP32DO95626 131 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 ALDH1A1P00352 501 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 MYCP01106 439 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 KRT1P04264 644 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 MDH1P40925 334 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 ERFP50548 548 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 BPIFB4P59827 614 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 PUDPQ08623 228 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM25Q14258 630 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 LRRC14Q15048 493 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 KCTD21Q4G0X4 260 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 EPM2AIP1Q7L775 607 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 SPATA21Q7Z572 469 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 TCAIMQ8N3R3 496 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 METTL13Q8N6R0 699 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 STKLD1Q8NE28 680 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 EFHD2Q96C19 240 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 THAP9Q9H5L6 903 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 CAAP1Q9H8G2 361 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 ABHD10Q9NUJ1 306 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 EMC3Q9P0I2 261 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 FBXO40Q9UH90 709 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 R3HDM2Q9Y2K5 976 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 REREQ9P2R6 1566 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 LRRIQ4A6NIV6 560 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 DPYSL4O14531 572 aa9.23□□□□□ -0.93
LIMCH1-218ENST00000513024 CAPN15O75808 1086 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms