RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 HSPBP1Q9NZL4 362 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 UVRAGQ9P2Y5 699 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 TNS2Q63HR2 1409 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 A0A0G2JND7 137 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 TMEM120BA0PK00 339 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 ITIH2P19823 946 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 SCTRP47872 440 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 ZNF844Q08AG5 666 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 MKRN3Q13064 507 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 RINT1Q6NUQ1 792 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 TMEM270Q6UE05 265 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 LRRC55Q6ZSA7 311 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 APBB1IPQ7Z5R6 666 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 SP8Q8IXZ3 490 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 PDIK1LQ8N165 341 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 FBXL13Q8NEE6 735 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 C18orf8Q96DM3 657 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 SH2D3AQ9BRG2 576 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 TRIM6Q9C030 488 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 FGFR1OP2Q9NVK5 253 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 DDX20Q9UHI6 824 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 PCDHGC5Q9Y5F6 944 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 A0A0A6YYK5 440 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 GOLGA8MH3BSY2 632 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 FOXN3O00409 490 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 MCF2LO15068 1137 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 MSH4O15457 936 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 TNFRSF8P28908 595 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 NIM1KQ8IY84 436 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 FBXO25Q8TCJ0 367 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 GRAMD1AQ96CP6 724 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 TTC25Q96NG3 672 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 POLR3CQ9BUI4 534 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 VCX3BQ9H321 246 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 GINM1Q9NU53 330 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 FGRP09769 529 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 P4HA1P13674 534 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 COILP38432 576 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 SNX16P57768 344 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 KCNMA1Q12791 1236 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 KYNUQ16719 465 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 RHOT1Q8IXI2 618 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 TRAIPQ9BWF2 469 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ROPN1BQ9BZX4 212 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ROPN1Q9HAT0 212 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 AGPAT3Q9NRZ7 376 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 TBC1D22BQ9NU19 505 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 FMN2Q9NZ56 1722 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 F8VZ95 297 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 TLR3O15455 904 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ESRRAP11474 423 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ADRA2BP18089 450 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 JAK3P52333 1124 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 PSMC6P62333 389 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 STAT4Q14765 748 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 COL23A1Q86Y22 540 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 C9orf72Q96LT7 481 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 CALN1Q9BXU9 219 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 GJA3Q9Y6H8 435 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 WDR64B1ANS9 1081 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 CES2O00748 559 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 FECHP22830 423 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 GPS1Q13098 491 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 PPP4R1Q8TF05 950 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ZSWIM1Q9BR11 485 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 FAM167BQ9BTA0 163 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 DDX23Q9BUQ8 820 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 NRBP2Q9NSY0 501 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ZFP69BQ9UJL9 534 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ZNF263O14978 683 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 CDH16O75309 829 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ARL4CP56559 192 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 TFAMQ00059 246 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC13A5Q86YT5 568 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 SUGP1Q8IWZ8 645 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 KIF2BQ8N4N8 673 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 KCTD6Q8NC69 237 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 EPS8L3Q8TE67 593 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 MSTO1Q9BUK6 570 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 TRIM55Q9BYV6 548 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 ZWILCHQ9H900 591 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 DCTN4Q9UJW0 460 aa8.97□□□□□ -0.97
LIMCH1-216ENST00000512820 DCCP43146 1447 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 NID2Q14112 1375 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 CNTNAP4Q9C0A0 1308 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 K7ERI5 159 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 DIAPH2O60879 1101 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 MYBL1P10243 752 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 SKIP12755 728 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 ZNF394Q53GI3 561 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 DARS2Q6PI48 645 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 SYDE1Q6ZW31 735 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 TMC3Q7Z5M5 1100 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 ERICH1Q86X53 443 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 MAP7D3Q8IWC1 876 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 TRIM42Q8IWZ5 723 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 ZBED8Q8IZ13 594 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 NOD2Q9HC29 1040 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC24A3Q9HC58 644 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 KCND2Q9NZV8 630 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms