RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 IFT20Q8IY31 132 aa17.43■□□□□ 0.38
SQSTM1-213ENST00000510187 ZNF296Q8WUU4 475 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-213ENST00000510187 ZHX3Q9H4I2 956 aa17.43■□□□□ 0.38
SQSTM1-213ENST00000510187 RBM12Q9NTZ6 932 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-213ENST00000510187 A0A087X0T9 212 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 GTPBP10A4D1E9 387 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 NOP56O00567 594 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 EIF3DO15371 548 aaKnown RBP eCLIP17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 SHOX2O60902 331 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 SUPT20HL2P0C7V6 817 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 FAM228BP0C875 321 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 EPB41P11171 864 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 KLRC1P26715 233 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 CXCR5P32302 372 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 CASP5P51878 434 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 PSMC5P62195 406 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 EXOC3L4Q17RC7 722 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 KIAA0753Q2KHM9 967 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 SWSAP1Q6NVH7 229 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 FAM76AQ8TAV0 307 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 PIGOQ8TEQ8 1089 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 HDAC7Q8WUI4 952 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 SPATA33Q96N06 139 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 NACC1Q96RE7 527 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 GDF3Q9NR23 364 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 OLFML3Q9NRN5 406 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 GABBR1Q9UBS5 961 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 SRRDQ9UH36 339 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 DOCK5Q9H7D0 1870 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 MYH10P35580 1976 aa17.42■□□□□ 0.38
SQSTM1-213ENST00000510187 BACH1O14867 736 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 TBCAO75347 108 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 ATG7O95352 703 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 IGHA2P01877 340 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 UCHL3P15374 230 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 APBA1Q02410 837 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 IRF5Q13568 498 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 UGCGQ16739 394 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 GJC2Q5T442 439 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 IQSEC1Q6DN90 963 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 GBP6Q6ZN66 633 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 IRF2BP2Q7Z5L9 587 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 TRIB2Q92519 343 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.41■□□□□ 0.388e-12■■□□□ 13.9
SQSTM1-213ENST00000510187 UBE4BO95155 1302 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 GFPT2O94808 682 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 GNRH1P01148 92 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 GH1P01241 217 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 NR3C1P04150 777 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 ZNF865P0CJ78 1059 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 SMPD1P17405 629 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 HOXD13P35453 343 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 PPFIA1Q13136 1202 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 PAK2Q13177 524 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 LAMC2Q13753 1193 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 HSDL1Q3SXM5 330 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 DUSP28Q4G0W2 176 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 MFSD14CQ5VZR4 134 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 CCDC60Q8IWA6 550 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 EIF1ADQ8N9N8 165 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 SEPT1Q8WYJ6 367 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.41■□□□□ 0.383e-7■■■■■ 32.1
SQSTM1-213ENST00000510187 ATP6V0A1Q93050 837 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 SPAG5Q96R06 1193 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 BHMT2Q9H2M3 363 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 DAAM1Q9Y4D1 1078 aa17.41■□□□□ 0.38
SQSTM1-213ENST00000510187 GSTTP1A0A1W2PQM5 241 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 GOLGA6CA6NDK9 693 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 ZBTB39O15060 712 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 GOLGA6DP0CG33 693 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 MYBP10242 640 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 PON1P27169 355 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 TCF7P36402 384 aaPredicted RBP17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 TNFAIP2Q03169 654 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 ARHGAP1Q07960 439 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 ARHGEF6Q15052 776 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 TRMT1LQ7Z2T5 733 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 C4orf19Q8IY42 314 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 MREGQ8N565 214 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 TAF4BQ92750 862 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 PSMB7Q99436 277 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 GPR20Q99678 358 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 ZNF302Q9NR11 478 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 GOLGA6AQ9NYA3 693 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 ADAMTS1Q9UHI8 967 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 INTUQ9ULD6 942 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 NENFQ9UMX5 172 aa17.4■□□□□ 0.38
SQSTM1-213ENST00000510187 LOXHD1Q8IVV2 1947 aa17.39■□□□□ 0.38
SQSTM1-213ENST00000510187 A0A0A6YYK5 440 aaPredicted RBP17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 DKC1O60832 514 aaKnown RBP eCLIP17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 HSF2BPO75031 334 aa17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 LYPLA2O95372 231 aa17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 YWHABP31946 246 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 MATR3P43243 847 aaKnown RBP eCLIP17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 TNNC1P63316 161 aa17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 LRRC31Q6UY01 552 aa17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 VPS36Q86VN1 386 aa17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 GPIHBP1Q8IV16 184 aa17.39■□□□□ 0.37
SQSTM1-213ENST00000510187 PBKQ96KB5 322 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms