RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 HERC4Q5GLZ8 1057 aaPredicted RBP10.04□□□□□ -0.8
NUP54-207ENST00000508583 ATF7IP2Q5U623 682 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 HAUS6Q7Z4H7 955 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 TMCO2Q7Z6W1 182 aaPredicted RBP10.04□□□□□ -0.8
NUP54-207ENST00000508583 RTN4RL1Q86UN2 441 aaPredicted RBP10.04□□□□□ -0.8
NUP54-207ENST00000508583 LRRC43Q8N309 656 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 FIBCD1Q8N539 461 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 TMEM87AQ8NBN3 555 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 TMEM161BQ8NDZ6 487 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 URGCPQ8TCY9 931 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 C7orf25Q9BPX7 421 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 KIFC3Q9BVG8 833 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 TRIM9Q9C026 710 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 TMEM117Q9H0C3 514 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 KANSL3Q9P2N6 904 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 PCDHB13Q9Y5F0 798 aa10.04□□□□□ -0.8
NUP54-207ENST00000508583 HNRNPDLO14979 420 aaKnown RBP10.03□□□□□ -0.8
NUP54-207ENST00000508583 ACTN4O43707 911 aaKnown RBP10.03□□□□□ -0.8
NUP54-207ENST00000508583 TOM1L1O75674 476 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 ZNF202O95125 648 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 CA3P07451 260 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 ITGA4P13612 1032 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 IBSPP21815 317 aaPredicted RBP10.03□□□□□ -0.8
NUP54-207ENST00000508583 PBX2P40425 430 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 LIG4P49917 911 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 RABGGTBP53611 331 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 UBE2HP62256 183 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 FAM160A1Q05DH4 1040 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 AMHR2Q16671 573 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 KYAT1Q16773 422 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 UNC13DQ70J99 1090 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 SFR1Q86XK3 245 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 CRIPAKQ8N1N5 446 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 RNF169Q8NCN4 708 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 LRRC15Q8TF66 581 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 DNAJC19Q96DA6 116 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 CPB2Q96IY4 423 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 TGS1Q96RS0 853 aaKnown RBP10.03□□□□□ -0.8
NUP54-207ENST00000508583 TCHPQ9BT92 498 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 GTPBP4Q9BZE4 634 aaKnown RBP10.03□□□□□ -0.8
NUP54-207ENST00000508583 NKX2-4Q9H2Z4 354 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 ZNF576Q9H609 170 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 TBX20Q9UMR3 447 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 TNFSF13BQ9Y275 285 aa10.03□□□□□ -0.8
NUP54-207ENST00000508583 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.03□□□□□ -0.8
NUP54-207ENST00000508583 CHD9Q3L8U1 2897 aa10.02□□□□□ -0.8
NUP54-207ENST00000508583 TBKBP1A7MCY6 615 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 CLDN3O15551 220 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 B4GALT5O43286 388 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 GTPBP6O43824 516 aaPredicted RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 KINO60870 393 aaKnown RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 KIF20AO95235 890 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 GCNT3O95395 438 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 MCF2P10911 925 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 MATR3P43243 847 aaKnown RBP eCLIP10.02□□□□□ -0.81
NUP54-207ENST00000508583 AFMP43652 599 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 YARSP54577 528 aaKnown RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 GTF2BQ00403 316 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 COASYQ13057 564 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 POSTNQ15063 836 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 ZNF568Q3ZCX4 644 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 SPOUT1Q5T280 376 aaKnown RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 SLFN12LQ6IEE8 588 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 MPZL3Q6UWV2 235 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 KRBA2Q6ZNG9 492 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 CLEC17AQ6ZS10 378 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 ZNF720Q7Z2F6 126 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 MRPL10Q7Z7H8 261 aaKnown RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 ZNF598Q86UK7 904 aaKnown RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 MAP4K3Q8IVH8 894 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 ZNF689Q96CS4 500 aaPredicted RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 PAGE5Q96GU1 130 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 CHAMP1Q96JM3 812 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 TIGD1Q96MW7 591 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 ACCSQ96QU6 501 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 RPS6KC1Q96S38 1066 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 ACO2Q99798 780 aaKnown RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 CCDC94Q9BW85 323 aaPredicted RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 PLVAPQ9BX97 442 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 PDZD7Q9H5P4 517 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 TMEM206Q9H813 350 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 RSAD1Q9HA92 442 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 POLD4Q9HCU8 107 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 TOPORSQ9NS56 1045 aaPredicted RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 EXOC1Q9NV70 894 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 STK39Q9UEW8 545 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 SERTAD1Q9UHV2 236 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 YBX2Q9Y2T7 364 aaKnown RBP10.02□□□□□ -0.81
NUP54-207ENST00000508583 GIT1Q9Y2X7 761 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 IPPQ9Y573 584 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 UBE4BO95155 1302 aa10.02□□□□□ -0.81
NUP54-207ENST00000508583 LINC01553A4QN01 128 aa10.01□□□□□ -0.81
NUP54-207ENST00000508583 EIF3DO15371 548 aaKnown RBP eCLIP10.01□□□□□ -0.81
NUP54-207ENST00000508583 NR1I2O75469 434 aa10.01□□□□□ -0.81
NUP54-207ENST00000508583 SMC2O95347 1197 aa10.01□□□□□ -0.81
NUP54-207ENST00000508583 NPTXRO95502 500 aa10.01□□□□□ -0.81
NUP54-207ENST00000508583 PIGRP01833 764 aa10.01□□□□□ -0.81
NUP54-207ENST00000508583 RB1P06400 928 aa10.01□□□□□ -0.81
NUP54-207ENST00000508583 MYOGP15173 224 aa10.01□□□□□ -0.81
NUP54-207ENST00000508583 LAG3P18627 525 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms