RNA–Protein interactions for RNA: ENST00000506409.1

MED28-204, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 347 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-204ENST00000506409 RNF39Q9H2S5 420 aa17.15■□□□□ 0.34
MED28-204ENST00000506409 NXF3Q9H4D5 531 aaKnown RBP17.15■□□□□ 0.34
MED28-204ENST00000506409 IGFLR1Q9H665 355 aa17.15■□□□□ 0.34
MED28-204ENST00000506409 NRDE2Q9H7Z3 1164 aa17.15■□□□□ 0.34
MED28-204ENST00000506409 CLDND1Q9NY35 253 aa17.15■□□□□ 0.34
MED28-204ENST00000506409 KANSL3Q9P2N6 904 aa17.15■□□□□ 0.34
MED28-204ENST00000506409 PCDHGC5Q9Y5F6 944 aa17.15■□□□□ 0.34
MED28-204ENST00000506409 TTLL13PA6NNM8 815 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 NT5C1B-RDH14C9J2C7 533 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 ACKR2O00590 384 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 N4BP3O15049 544 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 POMCP01189 267 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 BMP1P13497 986 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 MARCKSP29966 332 aaPredicted RBP17.14■□□□□ 0.33
MED28-204ENST00000506409 MLH1P40692 756 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 NPTX2P47972 431 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 AFF1P51825 1210 aaKnown RBP17.14■□□□□ 0.33
MED28-204ENST00000506409 SLC12A3P55017 1021 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 ERVFC1P60507 584 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 RAD51AP2Q09MP3 1159 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 PDE12Q6L8Q7 609 aaKnown RBP17.14■□□□□ 0.33
MED28-204ENST00000506409 ADGRD2Q7Z7M1 963 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 ADAMTS19Q8TE59 1207 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 TMEM169Q96HH4 297 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 FAM193BQ96PV7 902 aaPredicted RBP17.14■□□□□ 0.33
MED28-204ENST00000506409 GAD1Q99259 594 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 TCF25Q9BQ70 676 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 ENTPD7Q9NQZ7 604 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 KCND2Q9NZV8 630 aa17.14■□□□□ 0.33
MED28-204ENST00000506409 ARL5CA6NH57 179 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 K7ERI5 159 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 GALTP07902 379 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 GTF2F1P35269 517 aaKnown RBP eCLIP17.13■□□□□ 0.33
MED28-204ENST00000506409 NRIP1P48552 1158 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 MAPK7Q13164 816 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 KARSQ15046 597 aaKnown RBP17.13■□□□□ 0.33
MED28-204ENST00000506409 LEXMQ3ZCV2 418 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 RBM23Q86U06 439 aaKnown RBP17.13■□□□□ 0.33
MED28-204ENST00000506409 ZNF280BQ86YH2 543 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 ZFP42Q96MM3 310 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 USP28Q96RU2 1077 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 ADPGKQ9BRR6 497 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 PDZD7Q9H5P4 517 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 C17orf75Q9HAS0 396 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 KMT5AQ9NQR1 393 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 DNAJB4Q9UDY4 337 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 FBXO2Q9UK22 296 aaPredicted RBP17.13■□□□□ 0.33
MED28-204ENST00000506409 USP20Q9Y2K6 914 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 GIT1Q9Y2X7 761 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 TTC28Q96AY4 2481 aa17.13■□□□□ 0.33
MED28-204ENST00000506409 SPTBN5Q9NRC6 3674 aaKnown RBP17.12■□□□□ 0.33
MED28-204ENST00000506409 SFI1A8K8P3 1242 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 H3BQ06 376 aaPredicted RBP17.12■□□□□ 0.33
MED28-204ENST00000506409 FSCN2O14926 492 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 INPPL1O15357 1258 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 B4GALT3O60512 393 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 DDHD2O94830 711 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 EDN1P05305 212 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 PLCG1P19174 1290 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 AKAP5P24588 427 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 SLC11A1P49279 550 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 CTC1Q2NKJ3 1217 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 PLPP4Q5VZY2 271 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 TMC7Q7Z402 723 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 TMEM173Q86WV6 379 aaPredicted RBP17.12■□□□□ 0.33
MED28-204ENST00000506409 CCSER1Q9C0I3 900 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 TLE6Q9H808 572 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 ARHGAP28Q9P2N2 729 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 PARP2Q9UGN5 583 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 RBM19Q9Y4C8 960 aaKnown RBP17.12■□□□□ 0.33
MED28-204ENST00000506409 SRPRBQ9Y5M8 271 aaKnown RBP17.12■□□□□ 0.33
MED28-204ENST00000506409 PHLPP2Q6ZVD8 1323 aa17.12■□□□□ 0.33
MED28-204ENST00000506409 LINC01565O15544 149 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 PDIA4P13667 645 aaKnown RBP17.11■□□□□ 0.33
MED28-204ENST00000506409 PLS3P13797 630 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 LTBRP36941 435 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 SCNN1GP51170 649 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 DHX8Q14562 1220 aaKnown RBP17.11■□□□□ 0.33
MED28-204ENST00000506409 SPECC1Q5M775 1068 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 ATF7IP2Q5U623 682 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 LRRC15Q8TF66 581 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 IGSF21Q96ID5 467 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 EPSTI1Q96J88 318 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 UHRF1Q96T88 793 aaPredicted RBP17.11■□□□□ 0.33
MED28-204ENST00000506409 TMEM175Q9BSA9 504 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 NGRNQ9NPE2 291 aaKnown RBP17.11■□□□□ 0.33
MED28-204ENST00000506409 BLOC1S4Q9NUP1 217 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 KCNG1Q9UIX4 513 aa17.11■□□□□ 0.33
MED28-204ENST00000506409 TCF20Q9UGU0 1960 aaKnown RBP17.11■□□□□ 0.33
MED28-204ENST00000506409 NPHP3-ACAD11A0A0J9YXS1 232 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 PER2O15055 1255 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 SLC16A4O15374 487 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 ALDH2P05091 517 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 TXLNAP40222 546 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 NDUFV1P49821 464 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 SMTNP53814 917 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 CACNB1Q02641 598 aaPredicted RBP17.1■□□□□ 0.33
MED28-204ENST00000506409 DLX2Q07687 328 aaPredicted RBP17.1■□□□□ 0.33
MED28-204ENST00000506409 ADAM15Q13444 863 aa17.1■□□□□ 0.33
MED28-204ENST00000506409 SMC1AQ14683 1233 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms