RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	SLC24A5	Q71RS6	500 aa		13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	TAS1R3	Q7RTX0	852 aa		13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	SFR1	Q86XK3	245 aa		13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	CRIPAK	Q8N1N5	446 aa		13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	CCDC51	Q96ER9	411 aa		13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	LMBRD1	Q9NUN5	540 aa		13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	PIN4	Q9Y237	131 aa	Known RBP	13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	CNTNAP2	Q9UHC6	1331 aa		13.1	□□□□□ -0.31
PDLIM5-208	ENST00000504489	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489		A0A1B0GUA9	196 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	GOLGA6L22	H0YM25	854 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	B4GALT5	O43286	388 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	SKI	P12755	728 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	ATP2A2	P16615	1042 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	CASP1	P29466	404 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	NMT1	P30419	496 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	SARS	P49591	514 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	GTF2B	Q00403	316 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	EHHADH	Q08426	723 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	PRPF4B	Q13523	1007 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	LRIT3	Q3SXY7	679 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	NT5DC1	Q5TFE4	455 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	TWF2	Q6IBS0	349 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	NOTUM	Q6P988	496 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	ZNF720	Q7Z2F6	126 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	HS6ST3	Q8IZP7	471 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	TOP1MT	Q969P6	601 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	HVCN1	Q96D96	273 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	STRA6	Q9BX79	667 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	BLZF1	Q9H2G9	400 aa		13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	ELAC1	Q9H777	363 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	MRPL44	Q9H9J2	332 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM5-208	ENST00000504489	COL4A6	Q14031	1691 aa		13.08	□□□□□ -0.31
PDLIM5-208	ENST00000504489		A0A0U1RQF3	1178 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489		K7ENM7	598 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	N4BP3	O15049	544 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	KLRC4	O43908	158 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	KIN	O60870	393 aa	Known RBP	13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ZNF623	O75123	536 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PPP1R37	O75864	691 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	EOMES	O95936	686 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	EDN1	P05305	212 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	STAG3L1	P0CL83	205 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	RAB27A	P51159	221 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	DPYD	Q12882	1025 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	STRN3	Q13033	797 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ALCAM	Q13740	583 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	POSTN	Q15063	836 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	UBXN11	Q5T124	520 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ZPBP2	Q6X784	338 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ECHDC2	Q86YB7	292 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	NPAS4	Q8IUM7	802 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	HERC6	Q8IVU3	1022 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	MYOCD	Q8IZQ8	938 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	CPB2	Q96IY4	423 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	MRPL4	Q9BYD3	311 aa	Known RBP	13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	FAM105A	Q9NUU6	356 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	HOOK1	Q9UJC3	728 aa	Known RBP	13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	TBX20	Q9UMR3	447 aa		13.08	□□□□□ -0.32
PDLIM5-208	ENST00000504489	GJB5	O95377	273 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PSMD2	Q13200	908 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	FAM26F	Q5R3K3	315 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ATF7IP2	Q5U623	682 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	SLC27A1	Q6PCB7	646 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	MRPL10	Q7Z7H8	261 aa	Known RBP	13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ZNF598	Q86UK7	904 aa	Known RBP	13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ACO2	Q99798	780 aa	Known RBP	13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	TARS2	Q9BW92	718 aa	Known RBP	13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PDZD7	Q9H5P4	517 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	TMEM161A	Q9NX61	479 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	TBC1D7	Q9P0N9	293 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	TNFSF13B	Q9Y275	285 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PCDHB7	Q9Y5E2	793 aa		13.07	□□□□□ -0.32
PDLIM5-208	ENST00000504489	GRXCR1	A8MXD5	290 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	UPP2	O95045	317 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	GCNT3	O95395	438 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PIGR	P01833	764 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	RPN1	P04843	607 aa	Known RBP	13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	CASP5	P51878	434 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	HTRA4	P83105	476 aa	Predicted RBP	13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	SMAD3	P84022	425 aa	Known RBP	13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	KCNB1	Q14721	858 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	TMEM132A	Q24JP5	1023 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	KMT5B	Q4FZB7	885 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	STXBP4	Q6ZWJ1	553 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	MAP4K3	Q8IVH8	894 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	CCDC47	Q96A33	483 aa	Known RBP	13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	ADPGK	Q9BRR6	497 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	FGFBP2	Q9BYJ0	223 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PTPRH	Q9HD43	1115 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	EXOC1	Q9NV70	894 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	LRFN2	Q9ULH4	789 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	USP20	Q9Y2K6	914 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PCDHB2	Q9Y5E7	798 aa		13.06	□□□□□ -0.32
PDLIM5-208	ENST00000504489	PCDHA11	Q9Y5I1	949 aa		13.06	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms