RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 PCDH8O95206 1070 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 LY86O95711 162 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 SEC24CP53992 1094 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 GUCY1B3Q02153 619 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 PRR16Q569H4 304 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 UBE2R2Q712K3 238 aaPredicted RBP5.96□□□□□ -1.46
VPS50-219ENST00000495039 CDYL2Q8N8U2 506 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 CLUHP3Q96NS8 147 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 RSAD1Q9HA92 442 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 USP36Q9P275 1121 aaKnown RBP5.96□□□□□ -1.46
VPS50-219ENST00000495039 DKK2Q9UBU2 259 aa5.96□□□□□ -1.46
VPS50-219ENST00000495039 ST20-MTHFSA0A0A6YYL1 179 aa5.95□□□□□ -1.46
VPS50-219ENST00000495039 LEFTY2O00292 366 aa5.95□□□□□ -1.46
VPS50-219ENST00000495039 CD40P25942 277 aa5.95□□□□□ -1.46
VPS50-219ENST00000495039 BLOC1S1P78537 153 aa5.95□□□□□ -1.46
VPS50-219ENST00000495039 CREB3L3Q68CJ9 461 aa5.95□□□□□ -1.46
VPS50-219ENST00000495039 GPRIN1Q7Z2K8 1008 aa5.95□□□□□ -1.46
VPS50-219ENST00000495039 XYLT1Q86Y38 959 aa5.95□□□□□ -1.46
VPS50-219ENST00000495039 INTS7Q9NVH2 962 aaKnown RBP5.95□□□□□ -1.46
VPS50-219ENST00000495039 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS50-219ENST00000495039 CCDC9Q9Y3X0 531 aaKnown RBP5.95□□□□□ -1.46
VPS50-219ENST00000495039 PIPSLA2A3N6 862 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 HLA-DOAP06340 250 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 SPATA31D3P0C874 917 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 ZSCAN20P17040 1043 aaPredicted RBP5.94□□□□□ -1.46
VPS50-219ENST00000495039 CXCR5P32302 372 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 RNASE9P60153 205 aaKnown RBP5.94□□□□□ -1.46
VPS50-219ENST00000495039 NHLH2Q02577 135 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 RBL2Q08999 1139 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 DDB1Q16531 1140 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 DRICH1Q6PGQ1 229 aaPredicted RBP5.94□□□□□ -1.46
VPS50-219ENST00000495039 SPATA31D4Q6ZUB0 917 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 TAS1R1Q7RTX1 841 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 CPEB3Q8NE35 698 aaKnown RBP5.94□□□□□ -1.46
VPS50-219ENST00000495039 ZMAT4Q9H898 229 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 SPON1Q9HCB6 807 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 OXSMQ9NWU1 459 aa5.94□□□□□ -1.46
VPS50-219ENST00000495039 NRP2O60462 931 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 SEC24DO94855 1032 aaPredicted RBP5.93□□□□□ -1.46
VPS50-219ENST00000495039 JMJD7P0C870 316 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 XPAP23025 273 aaPredicted RBP5.93□□□□□ -1.46
VPS50-219ENST00000495039 DDX6P26196 483 aaKnown RBP eCLIP5.93□□□□□ -1.46
VPS50-219ENST00000495039 MGAT1P26572 445 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 ELLP55199 621 aaPredicted RBP5.93□□□□□ -1.46
VPS50-219ENST00000495039 FOXI1Q12951 378 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 ABHD17BQ5VST6 288 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 CDCA2Q69YH5 1023 aaPredicted RBP5.93□□□□□ -1.46
VPS50-219ENST00000495039 OR10H5Q8NGA6 315 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 FERMT2Q96AC1 680 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 ZKSCAN5Q9Y2L8 839 aa5.93□□□□□ -1.46
VPS50-219ENST00000495039 C1RP00736 705 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 GPR15P49685 360 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 RBM25P49756 843 aaKnown RBP5.92□□□□□ -1.46
VPS50-219ENST00000495039 LRRC32Q14392 662 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 CCDC178Q5BJE1 867 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 ESPNLQ6ZVH7 1005 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 MSL3Q8N5Y2 521 aaKnown RBP5.92□□□□□ -1.46
VPS50-219ENST00000495039 BOLLQ8N9W6 283 aaKnown RBP5.92□□□□□ -1.46
VPS50-219ENST00000495039 SIMC1Q8NDZ2 872 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 SLC9A6Q92581 669 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 USP18Q9UMW8 372 aa5.92□□□□□ -1.46
VPS50-219ENST00000495039 UNC119BA6NIH7 251 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 B5MCH6 92 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 ELL2O00472 640 aaPredicted RBP5.91□□□□□ -1.46
VPS50-219ENST00000495039 ZNF185O15231 689 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 ERBB2P04626 1255 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 RBP3P10745 1247 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 NRG3P56975 720 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 CFAP100Q494V2 611 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 SOGA3Q5TF21 947 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 LMBR1LQ6UX01 489 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 HDGFL2Q7Z4V5 671 aaPredicted RBP5.91□□□□□ -1.46
VPS50-219ENST00000495039 SYT12Q8IV01 421 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 LILRB2Q8N423 598 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 GAB3Q8WWW8 586 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 FDXACB1Q9BRP7 624 aaPredicted RBP5.91□□□□□ -1.46
VPS50-219ENST00000495039 SPATA5L1Q9BVQ7 753 aa5.91□□□□□ -1.46
VPS50-219ENST00000495039 A0A1W2PR48 441 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 ESRRBO95718 433 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 PFKMP08237 780 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 MXRA7P84157 204 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 APBA1Q02410 837 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 TP53BP2Q13625 1128 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 PDCD4Q53EL6 469 aaKnown RBP5.9□□□□□ -1.46
VPS50-219ENST00000495039 PAPD7Q5XG87 772 aaKnown RBP5.9□□□□□ -1.46
VPS50-219ENST00000495039 BTNL9Q6UXG8 535 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 PASD1Q8IV76 773 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 EFHBQ8N7U6 833 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 CDC5LQ99459 802 aaKnown RBP5.9□□□□□ -1.46
VPS50-219ENST00000495039 TEX101Q9BY14 249 aa5.9□□□□□ -1.46
VPS50-219ENST00000495039 H2AFY2Q9P0M6 372 aaPredicted RBP5.9□□□□□ -1.46
VPS50-219ENST00000495039 GAS7O60861 476 aa5.89□□□□□ -1.47
VPS50-219ENST00000495039 ATP2A2P16615 1042 aaKnown RBP5.89□□□□□ -1.47
VPS50-219ENST00000495039 MGAT5Q09328 741 aa5.89□□□□□ -1.47
VPS50-219ENST00000495039 MPP3Q13368 585 aa5.89□□□□□ -1.47
VPS50-219ENST00000495039 EPHA10Q5JZY3 1008 aa5.89□□□□□ -1.47
VPS50-219ENST00000495039 ZBTB41Q5SVQ8 909 aa5.89□□□□□ -1.47
VPS50-219ENST00000495039 ARMC6Q6NXE6 501 aa5.89□□□□□ -1.47
VPS50-219ENST00000495039 EFCAB12Q6NXP0 572 aa5.89□□□□□ -1.47
VPS50-219ENST00000495039 GLB1L2Q8IW92 636 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms