RNA–Protein interactions for RNA: ENST00000494893.5

SNX17-209, Transcript of sorting nexin 17, human

TSL 2

Gene SNX17, Length 966 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNX17-209	ENST00000494893	GOLGA6L22	H0YM25	854 aa		18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	B4GALT3	O60512	393 aa		18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	NPTXR	O95502	500 aa		18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	IGFBP4	P22692	258 aa		18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	STAT6	P42226	847 aa		18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	NCKAP1L	P55160	1127 aa		18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	PRPF4B	Q13523	1007 aa	Known RBP	18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	SLC27A1	Q6PCB7	646 aa		18.86	■□□□□ 0.61
SNX17-209	ENST00000494893	SCAND2P	Q9GZW5	306 aa	Predicted RBP	18.86	■□□□□ 0.61
SNX17-209	ENST00000494893		K7ERI5	159 aa		18.85	■□□□□ 0.61
SNX17-209	ENST00000494893	MAPT	P10636	758 aa	Known RBP	18.85	■□□□□ 0.61
SNX17-209	ENST00000494893	GPM6B	Q13491	265 aa		18.85	■□□□□ 0.61
SNX17-209	ENST00000494893	DYM	Q7RTS9	669 aa		18.85	■□□□□ 0.61
SNX17-209	ENST00000494893	TMEM87A	Q8NBN3	555 aa		18.85	■□□□□ 0.61
SNX17-209	ENST00000494893	MAFA	Q8NHW3	353 aa	Predicted RBP	18.85	■□□□□ 0.61
SNX17-209	ENST00000494893	DDX12P	Q92771	950 aa		18.85	■□□□□ 0.61
SNX17-209	ENST00000494893	ABLIM1	O14639	778 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	GRM6	O15303	877 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	RB1	P06400	928 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	PBX3	P40426	434 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	NCBP1	Q09161	790 aa	Known RBP	18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	CAMK1	Q14012	370 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	CSPP1	Q1MSJ5	1256 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	NOMO2	Q5JPE7	1267 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	SV2B	Q7L1I2	683 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	ABI1	Q8IZP0	508 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	LRRC43	Q8N309	656 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	COLGALT1	Q8NBJ5	622 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	STAM	Q92783	540 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	KCNN1	Q92952	543 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	DHX58	Q96C10	678 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	PGBD4	Q96DM1	585 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	SPATA32	Q96LK8	384 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	ACO2	Q99798	780 aa	Known RBP	18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	TARS2	Q9BW92	718 aa	Known RBP	18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	RSAD1	Q9HA92	442 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	PARVG	Q9HBI0	331 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	PTPRH	Q9HD43	1115 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	TBC1D13	Q9NVG8	400 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	MIOS	Q9NXC5	875 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	INPP5F	Q9Y2H2	1132 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	RWDD3	Q9Y3V2	267 aa		18.84	■□□□□ 0.61
SNX17-209	ENST00000494893	N4BP3	O15049	544 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	INPPL1	O15357	1258 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	FAM13A	O94988	1023 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	ITGB1	P05556	798 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	KRT18	P05783	430 aa	Known RBP	18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	ITGA4	P13612	1032 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	DNAJB1	P25685	340 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	ATF7IP2	Q5U623	682 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	GLB1L	Q6UWU2	654 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	MYCT1	Q8N699	235 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	KLHL23	Q8NBE8	558 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	CNNM3	Q8NE01	707 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	GSTCD	Q8NEC7	633 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	P2RX5	Q93086	422 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	APOL6	Q9BWW8	343 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	PLVAP	Q9BX97	442 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	CXCL16	Q9H2A7	254 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	GDPD2	Q9HCC8	539 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	KBTBD4	Q9NVX7	518 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	LARS	Q9P2J5	1176 aa	Known RBP	18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	PLAGL2	Q9UPG8	496 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	TNFSF13B	Q9Y275	285 aa		18.83	■□□□□ 0.6
SNX17-209	ENST00000494893	PROZ	P22891	400 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	AKAP5	P24588	427 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	NMT1	P30419	496 aa	Known RBP	18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	HAUS6	Q7Z4H7	955 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	SFR1	Q86XK3	245 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	ZNF280B	Q86YH2	543 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	SPPL3	Q8TCT6	385 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	ZBTB45	Q96K62	511 aa	Predicted RBP	18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	ZFP42	Q96MM3	310 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	GAD1	Q99259	594 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	C11orf84	Q9BUA3	381 aa	Predicted RBP	18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	CDT1	Q9H211	546 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	NRDE2	Q9H7Z3	1164 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	ALG13	Q9NP73	1137 aa	Known RBP	18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	MYO9B	Q13459	2157 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	PRUNE2	Q8WUY3	3088 aa		18.82	■□□□□ 0.6
SNX17-209	ENST00000494893	FRMD3	A2A2Y4	597 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	ARL5C	A6NH57	179 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	POLR2D	O15514	142 aa	Known RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	TRAK2	O60296	914 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	TBCA	O75347	108 aa	Known RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	PRPF40A	O75400	957 aa	Known RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	DDHD2	O94830	711 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	LAG3	P18627	525 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	MLH1	P40692	756 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	SMTN	P53814	917 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	CCDC85B	Q15834	202 aa	Predicted RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	SPOUT1	Q5T280	376 aa	Known RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	ADAL	Q6DHV7	355 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	KCNT2	Q6UVM3	1135 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	CEP120	Q8N960	986 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	MRPL38	Q96DV4	380 aa	Known RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	MRPL9	Q9BYD2	267 aa	Known RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	MRPL4	Q9BYD3	311 aa	Known RBP	18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	FGFBP2	Q9BYJ0	223 aa		18.81	■□□□□ 0.6
SNX17-209	ENST00000494893	TRIM6	Q9C030	488 aa	Predicted RBP	18.81	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms