RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 TRIM50Q86XT4 487 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 SYCP3Q8IZU3 236 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 EHBP1Q8NDI1 1231 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 ZSWIM2Q8NEG5 633 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 ZNF397Q8NF99 534 aaPredicted RBP7.41□□□□□ -1.22
MSH5-217ENST00000494458 OLIG1Q8TAK6 271 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 CPLX3Q8WVH0 158 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 GLG1Q92896 1179 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 PPP1R13BQ96KQ4 1090 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 EIF3CQ99613 913 aaKnown RBP7.41□□□□□ -1.22
MSH5-217ENST00000494458 CHP1Q99653 195 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 SYT11Q9BT88 431 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 KIFC3Q9BVG8 833 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 HAPLN2Q9GZV7 340 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 UPF3AQ9H1J1 476 aaKnown RBP7.41□□□□□ -1.22
MSH5-217ENST00000494458 TUT1Q9H6E5 874 aaKnown RBP7.41□□□□□ -1.22
MSH5-217ENST00000494458 IFT122Q9HBG6 1241 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 ARHGAP20Q9P2F6 1191 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 NENFQ9UMX5 172 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 REXO2Q9Y3B8 237 aaKnown RBP7.41□□□□□ -1.22
MSH5-217ENST00000494458 ATP8B3O60423 1300 aa7.41□□□□□ -1.22
MSH5-217ENST00000494458 RRN3P2A6NIE6 340 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 ACKR2O00590 384 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 ZSCAN12O43309 604 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 EXTL3O43909 919 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 SORBS3O60504 671 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 N4BP1O75113 896 aaKnown RBP7.4□□□□□ -1.22
MSH5-217ENST00000494458 NDUFA10O95299 355 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 LDHAP00338 332 aaKnown RBP7.4□□□□□ -1.22
MSH5-217ENST00000494458 CYBAP13498 195 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 SLC9A1P19634 815 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 RFX1P22670 979 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 ARHGAP25P42331 645 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 GPC3P51654 580 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 VAMP7P51809 220 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 ETF1P62495 437 aaKnown RBP7.4□□□□□ -1.22
MSH5-217ENST00000494458 LACTBP83111 547 aaPredicted RBP7.4□□□□□ -1.22
MSH5-217ENST00000494458 CDC42EP1Q00587 391 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 CAP1Q01518 475 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 MCL1Q07820 350 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 CYP24A1Q07973 514 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 PPP3CAQ08209 521 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 MTF1Q14872 753 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 SNRNP35Q16560 246 aaKnown RBP7.4□□□□□ -1.22
MSH5-217ENST00000494458 CCL14Q16627 93 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 AMHR2Q16671 573 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 CBWD6Q4V339 395 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 CBWD3Q5JTY5 395 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 CBWD5Q5RIA9 395 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 TOGARAM2Q6ZUX3 1019 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 CREBRFQ8IUR6 639 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 KIAA0319LQ8IZA0 1049 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 GPD1LQ8N335 351 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 TRPV1Q8NER1 839 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 NEK11Q8NG66 645 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 VTI1AQ96AJ9 217 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 ACO2Q99798 780 aaKnown RBP7.4□□□□□ -1.22
MSH5-217ENST00000494458 GPR88Q9GZN0 384 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 C2orf40Q9H1Z8 148 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 FAM207AQ9NSI2 230 aaPredicted RBP7.4□□□□□ -1.22
MSH5-217ENST00000494458 CNTNAP2Q9UHC6 1331 aa7.4□□□□□ -1.22
MSH5-217ENST00000494458 NRCAMQ92823 1304 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 LRRC53A6NM62 1247 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 LRRIQ3A6PVS8 624 aaPredicted RBP7.39□□□□□ -1.23
MSH5-217ENST00000494458 TNPO2O14787 897 aaKnown RBP7.39□□□□□ -1.23
MSH5-217ENST00000494458 ZNF263O14978 683 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 FANCGO15287 622 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PJA2O43164 708 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 KPNA6O60684 536 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 DUSP11O75319 330 aaKnown RBP7.39□□□□□ -1.23
MSH5-217ENST00000494458 TOM1L1O75674 476 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 CCDC175P0C221 793 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 KLRC1P26715 233 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 MAP2K2P36507 400 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 CYP2J2P51589 502 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 APLP1P51693 650 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 GJA9P57773 515 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 DLG4P78352 724 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 MBTD1Q05BQ5 628 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PSMD6Q15008 389 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PCBP1Q15365 356 aaKnown RBP eCLIP7.39□□□□□ -1.233e-7■■■■□ 19.3
MSH5-217ENST00000494458 DEFB115Q30KQ5 88 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PRAMEF19Q5SWL8 479 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 MAP3K21Q5TCX8 1036 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PHLDB3Q6NSJ2 640 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 CYP4F22Q6NT55 531 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 EFCAB12Q6NXP0 572 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 MTHFD1LQ6UB35 978 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.39□□□□□ -1.23
MSH5-217ENST00000494458 CBWD2Q8IUF1 395 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 ZNF710Q8N1W2 664 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 OR6J1Q8NGC5 347 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PRIMPOLQ96LW4 560 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 STK33Q9BYT3 514 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 TMEM117Q9H0C3 514 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 PCIF1Q9H4Z3 704 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 MMRN2Q9H8L6 949 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 NHEJ1Q9H9Q4 299 aaPredicted RBP7.39□□□□□ -1.23
MSH5-217ENST00000494458 TMEM8AQ9HCN3 771 aa7.39□□□□□ -1.23
MSH5-217ENST00000494458 SUCLA2Q9P2R7 463 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms