RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 MRPL49Q13405 166 aaKnown RBP6.21□□□□□ -1.42
SMC4-223ENST00000493695 BMS1Q14692 1282 aaKnown RBP6.21□□□□□ -1.42
SMC4-223ENST00000493695 NXPE1Q8N323 547 aa6.21□□□□□ -1.42
SMC4-223ENST00000493695 LILRA3Q8N6C8 439 aaPredicted RBP6.21□□□□□ -1.42
SMC4-223ENST00000493695 GAB3Q8WWW8 586 aa6.21□□□□□ -1.42
SMC4-223ENST00000493695 THG1LQ9NWX6 298 aaKnown RBP6.21□□□□□ -1.42
SMC4-223ENST00000493695 ELL2O00472 640 aaPredicted RBP6.2□□□□□ -1.42
SMC4-223ENST00000493695 NRP2O60462 931 aa6.2□□□□□ -1.42
SMC4-223ENST00000493695 PRAMEF4O60810 478 aa6.2□□□□□ -1.42
SMC4-223ENST00000493695 WNT3AP56704 352 aa6.2□□□□□ -1.42
SMC4-223ENST00000493695 NAF1Q96HR8 494 aaKnown RBP6.2□□□□□ -1.42
SMC4-223ENST00000493695 BBC3Q96PG8 261 aaPredicted RBP6.2□□□□□ -1.42
SMC4-223ENST00000493695 CDC5LQ99459 802 aaKnown RBP6.2□□□□□ -1.42
SMC4-223ENST00000493695 DNAJC2Q99543 621 aaKnown RBP6.2□□□□□ -1.42
SMC4-223ENST00000493695 ZMAT4Q9H898 229 aa6.2□□□□□ -1.42
SMC4-223ENST00000493695 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.2□□□□□ -1.42
SMC4-223ENST00000493695 CLCA2Q9UQC9 943 aa6.2□□□□□ -1.42
SMC4-223ENST00000493695 ASMTLO95671 621 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 HLA-DOAP06340 250 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 CLEC2LP0C7M8 214 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 ATXN1P54253 815 aaKnown RBP6.19□□□□□ -1.42
SMC4-223ENST00000493695 GUCY1B3Q02153 619 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 APBA1Q02410 837 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 SART3Q15020 963 aaKnown RBP6.19□□□□□ -1.42
SMC4-223ENST00000493695 METTL24Q5JXM2 366 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 CCDC62Q6P9F0 684 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 PRIMA1Q86XR5 153 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 PLXDC1Q8IUK5 500 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 MSL3Q8N5Y2 521 aaKnown RBP6.19□□□□□ -1.42
SMC4-223ENST00000493695 CPEB3Q8NE35 698 aaKnown RBP6.19□□□□□ -1.42
SMC4-223ENST00000493695 CHTF18Q8WVB6 975 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 PHACTR3Q96KR7 559 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 C8orf37Q96NL8 207 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 ENKD1Q9H0I2 346 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 OSBPL2Q9H1P3 480 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 RNF181Q9P0P0 153 aa6.19□□□□□ -1.42
SMC4-223ENST00000493695 USP36Q9P275 1121 aaKnown RBP6.19□□□□□ -1.42
SMC4-223ENST00000493695 SPATA31D3P0C874 917 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 CXCR5P32302 372 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 PLA2G5P39877 138 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 KPNA1P52294 538 aaPredicted RBP6.18□□□□□ -1.42
SMC4-223ENST00000493695 MXRA7P84157 204 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 PPARAQ07869 468 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 HNRNPA0Q13151 305 aaKnown RBP6.18□□□□□ -1.42
SMC4-223ENST00000493695 NFE2L2Q16236 605 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 SP5Q6BEB4 398 aaPredicted RBP6.18□□□□□ -1.42
SMC4-223ENST00000493695 SPATA31D4Q6ZUB0 917 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 DOK3Q7L591 496 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 TAS1R1Q7RTX1 841 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 ARHGEF19Q8IW93 802 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 OR10H5Q8NGA6 315 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 SYNPO2LQ9H987 977 aa6.18□□□□□ -1.42
SMC4-223ENST00000493695 CDK11AQ9UQ88 783 aaPredicted RBP6.18□□□□□ -1.42
SMC4-223ENST00000493695 GAGE12BA1L429 117 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 GAGE12HA6NDE8 117 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 HKR1P10072 659 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 PABPC4Q13310 644 aaKnown RBP eCLIP6.17□□□□□ -1.42
SMC4-223ENST00000493695 SQSTM1Q13501 440 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 C21orf62-AS1Q17RA5 79 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 ZBTB41Q5SVQ8 909 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 CREB3L3Q68CJ9 461 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 EFCAB12Q6NXP0 572 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 RNF169Q8NCN4 708 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 MRFAP1L1Q96HT8 127 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 ZNF496Q96IT1 587 aaPredicted RBP6.17□□□□□ -1.42
SMC4-223ENST00000493695 TEX101Q9BY14 249 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 MAGEC2Q9UBF1 373 aaPredicted RBP6.17□□□□□ -1.42
SMC4-223ENST00000493695 MAP3K2Q9Y2U5 619 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 INSL6Q9Y581 213 aa6.17□□□□□ -1.42
SMC4-223ENST00000493695 TMEM200CA6NKL6 621 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 ZNF891A8MT65 544 aaPredicted RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 DDX6P26196 483 aaKnown RBP eCLIP6.16□□□□□ -1.42
SMC4-223ENST00000493695 CLK3P49761 638 aaKnown RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 LRRC32Q14392 662 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 UBE3CQ15386 1083 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 SF3A1Q15459 793 aaKnown RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 DDB1Q16531 1140 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 FBXO42Q6P3S6 717 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 CNNM4Q6P4Q7 775 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 NPM2Q86SE8 214 aaKnown RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 GLB1L2Q8IW92 636 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 EFHBQ8N7U6 833 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 PPP1R14CQ8TAE6 165 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 SH3TC2Q8TF17 1288 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 NTN5Q8WTR8 489 aaPredicted RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 TFAP2CQ92754 450 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 GPR101Q96P66 508 aaPredicted RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 FDXACB1Q9BRP7 624 aaPredicted RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 ANO3Q9BYT9 981 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 WDR26Q9H7D7 661 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 USP15Q9Y4E8 981 aaPredicted RBP6.16□□□□□ -1.42
SMC4-223ENST00000493695 ZMYM3Q14202 1370 aa6.16□□□□□ -1.42
SMC4-223ENST00000493695 LCHNA4D1U4 455 aa6.15□□□□□ -1.42
SMC4-223ENST00000493695 ZNF185O15231 689 aa6.15□□□□□ -1.42
SMC4-223ENST00000493695 RAB11FIP3O75154 756 aa6.15□□□□□ -1.42
SMC4-223ENST00000493695 MGAT1P26572 445 aa6.15□□□□□ -1.42
SMC4-223ENST00000493695 PTH2RP49190 550 aa6.15□□□□□ -1.42
SMC4-223ENST00000493695 TP53BP2Q13625 1128 aa6.15□□□□□ -1.42
SMC4-223ENST00000493695 BEAN1Q3B7T3 259 aa6.15□□□□□ -1.42
SMC4-223ENST00000493695 PDCD4Q53EL6 469 aaKnown RBP6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms