RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 DGKHQ86XP1 1220 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ADGRF4Q8IZF3 695 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 TUBB6Q9BUF5 446 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 NOVA2Q9UNW9 492 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 PLEKHG1Q9ULL1 1385 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 RAP1GDS1P52306 607 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 DAB2P98082 770 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ZSCAN26Q16670 478 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 SMAP1Q8IYB5 467 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 KIFC3Q9BVG8 833 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 RUBCNLQ9H714 662 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ADAMTS1Q9UHI8 967 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ITGA4P13612 1032 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 EPB42P16452 691 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ANGEL2Q5VTE6 544 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 PPARGC1AQ9UBK2 798 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 CDC23Q9UJX2 597 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 KRT87PA6NCN2 255 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 FCGRTP55899 365 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 SCARF1Q14162 830 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 NBPF20Q3BBV1 942 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 NBPF10Q6P3W6 841 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 WDR75Q8IWA0 830 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 GPD1LQ8N335 351 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 MAGEB10Q96LZ2 347 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ZCWPW1Q9H0M4 648 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 JPH1Q9HDC5 661 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 AGO2Q9UKV8 859 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 TRAF3IP3Q9Y228 551 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 APOBEC2Q9Y235 224 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 C5orf58C9J3I9 102 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 GH1P01241 217 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 SLC8A1P32418 973 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 GCKP35557 465 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 SH3BGRP55822 239 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-212ENST00000491769 ETF1P62495 437 aaKnown RBP13.92□□□□□ -0.18
COL6A3-212ENST00000491769 LRRC74AQ0VAA2 488 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 EFTUD2Q15029 972 aaKnown RBP eCLIP13.92□□□□□ -0.18
COL6A3-212ENST00000491769 ASAP3Q8TDY4 903 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 ZNRF3Q9ULT6 936 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 ZBED6P86452 979 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 USP33Q8TEY7 942 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 NUP85Q9BW27 656 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 TRIM4Q9C037 500 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 CCDC90BQ9GZT6 254 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 ING2Q9H160 280 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 AAASQ9NRG9 546 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 LRRC53A6NM62 1247 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 BCAR1P56945 870 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 SPDYAQ5MJ70 313 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 PID1Q7Z2X4 250 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 CDKL3Q8IVW4 592 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-212ENST00000491769 RAD54LQ92698 747 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 SMYD3Q9H7B4 428 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 POTEFA5A3E0 1075 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 LUC7L3O95232 432 aaKnown RBP13.92□□□□□ -0.18
COL6A3-212ENST00000491769 POTEIP0CG38 1075 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 GPC5P78333 572 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 HDLBPQ00341 1268 aaKnown RBP13.92□□□□□ -0.18
COL6A3-212ENST00000491769 LMBRD2Q68DH5 695 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-212ENST00000491769 POTEGQ6S5H5 508 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 POTEEQ6S8J3 1075 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 CHMP1BQ7LBR1 199 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 PPM1NQ8N819 430 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 UNC45AQ9H3U1 944 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 GGA3Q9NZ52 723 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 FSCBQ5H9T9 825 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 HS6ST3Q8IZP7 471 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 TTC39CQ8N584 583 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 TXLNGQ9NUQ3 528 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 IP6K2Q9UHH9 426 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 LCMT1Q9UIC8 334 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 ZMYM4Q5VZL5 1548 aa13.92□□□□□ -0.18
COL6A3-212ENST00000491769 TSPOAP1O95153 1857 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 NBPF26B4DH59 902 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 ALDH1A2O94788 518 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 COBLL1Q53SF7 1204 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 GLB1LQ6UWU2 654 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 UNC13DQ70J99 1090 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 RNF180Q86T96 592 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 IFNLR1Q8IU57 520 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-212ENST00000491769 SNAP23O00161 211 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 PTPN12Q05209 780 aaKnown RBP13.91□□□□□ -0.18
COL6A3-212ENST00000491769 DUOXA2Q1HG44 320 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 OR9Q1Q8NGQ5 310 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 MED4Q9NPJ6 270 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-212ENST00000491769 ANGPTL2Q9UKU9 493 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 GGPS1O95749 300 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 HMOX2P30519 316 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 COG2Q14746 738 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 LDHDQ86WU2 507 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 AGAP1Q9UPQ3 857 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 RGS12O14924 1447 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 TLR2O60603 784 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 MRFAP1L1Q96HT8 127 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 FAM20AQ96MK3 541 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 NUDT12Q9BQG2 462 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 BFARQ9NZS9 450 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 WARS2Q9UGM6 360 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms