RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 PTPN14Q15678 1187 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 IL17AQ16552 155 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 EEF1DP3Q658K8 133 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 TMEM184AQ6ZMB5 413 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 MRPL10Q7Z7H8 261 aaKnown RBP9.91□□□□□ -0.82
HDAC3-211ENST00000491581 SLFN12Q8IYM2 578 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 GSTCDQ8NEC7 633 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 HASPINQ8TF76 798 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 WASF1Q92558 559 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 PPP2R3CQ969Q6 453 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 FBXL18Q96ME1 805 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 PUF60Q9UHX1 559 aaKnown RBP9.91□□□□□ -0.82
HDAC3-211ENST00000491581 FAM50BQ9Y247 325 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 HCN4Q9Y3Q4 1203 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 VWA8A3KMH1 1905 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 MYO10Q9HD67 2058 aa9.91□□□□□ -0.82
HDAC3-211ENST00000491581 DOCK6Q96HP0 2047 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 TMEM221A6NGB7 291 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 ARL5CA6NH57 179 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 LRRIQ4A6NIV6 560 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 M0R296 226 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 ERLIN2O94905 339 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 CTSAP10619 480 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 ITGA4P13612 1032 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 NCLP19338 710 aaKnown RBP9.9□□□□□ -0.82
HDAC3-211ENST00000491581 PPM1AP35813 382 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 ZXDAP98168 799 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 OTUD6AQ7L8S5 288 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 SRGAP1Q7Z6B7 1085 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 DDX53Q86TM3 631 aaKnown RBP9.9□□□□□ -0.82
HDAC3-211ENST00000491581 ALYREFQ86V81 257 aaKnown RBP9.9□□□□□ -0.82
HDAC3-211ENST00000491581 COLGALT2Q8IYK4 626 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 C4orf32Q8N8J7 132 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 PRSS33Q8NF86 280 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 EDAQ92838 391 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 C8orf76Q96K31 380 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 KLHL5Q96PQ7 755 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 TRAIPQ9BWF2 469 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 MRPL9Q9BYD2 267 aaKnown RBP9.9□□□□□ -0.82
HDAC3-211ENST00000491581 BRMS1Q9HCU9 246 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 NGRNQ9NPE2 291 aaKnown RBP9.9□□□□□ -0.82
HDAC3-211ENST00000491581 FAM86C1Q9NVL1 165 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 LIMCH1Q9UPQ0 1083 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 PCDHB6Q9Y5E3 794 aa9.9□□□□□ -0.82
HDAC3-211ENST00000491581 LILRB3O75022 631 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 RFPL2O75678 378 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 BRD1O95696 1058 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 TRIM29Q14134 588 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 TTC38Q5R3I4 469 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 TRIM67Q6ZTA4 783 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 KCNK18Q7Z418 384 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 NOSTRINQ8IVI9 506 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 FAM177A1Q8N128 213 aaPredicted RBP9.89□□□□□ -0.83
HDAC3-211ENST00000491581 TCP11Q8WWU5 503 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 ASIC4Q96FT7 647 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 POP1Q99575 1024 aaKnown RBP9.89□□□□□ -0.83
HDAC3-211ENST00000491581 CDCA3Q99618 268 aaPredicted RBP9.89□□□□□ -0.83
HDAC3-211ENST00000491581 GPR62Q9BZJ7 368 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 CSRNP2Q9H175 543 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 ADAM7Q9H2U9 754 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 ANKEF1Q9NU02 776 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 FAN1Q9Y2M0 1017 aa9.89□□□□□ -0.83
HDAC3-211ENST00000491581 CASTOR2A6NHX0 329 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 E9PMD0 336 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 N4BP1O75113 896 aaKnown RBP9.88□□□□□ -0.83
HDAC3-211ENST00000491581 LYPLA2O95372 231 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 OR52Z1P0C646 297 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 CD44P16070 742 aaKnown RBP9.88□□□□□ -0.83
HDAC3-211ENST00000491581 RAB27AP51159 221 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 CLCN4P51793 760 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 DSC1Q08554 894 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 GLRA4Q5JXX5 417 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PDE12Q6L8Q7 609 aaKnown RBP9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PRSS55Q6UWB4 352 aaPredicted RBP9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PALB2Q86YC2 1186 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 CEP120Q8N960 986 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 KREMEN2Q8NCW0 462 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 FBXO18Q8NFZ0 1043 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 URGCPQ8TCY9 931 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 RSAD2Q8WXG1 361 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 CASP10Q92851 521 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PBXIP1Q96AQ6 731 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PGBD4Q96DM1 585 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 FAM193BQ96PV7 902 aaPredicted RBP9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PLIN2Q99541 437 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 JPH2Q9BR39 696 aaPredicted RBP9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PDZD7Q9H5P4 517 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 SNTG2Q9NY99 539 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 PARP2Q9UGN5 583 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 LIMD1Q9UGP4 676 aa9.88□□□□□ -0.83
HDAC3-211ENST00000491581 MTCL1Q9Y4B5 1905 aaKnown RBP9.88□□□□□ -0.83
HDAC3-211ENST00000491581 ZNF318Q5VUA4 2279 aa9.87□□□□□ -0.83
HDAC3-211ENST00000491581 SFI1A8K8P3 1242 aa9.87□□□□□ -0.83
HDAC3-211ENST00000491581 I3L4J1 428 aa9.87□□□□□ -0.83
HDAC3-211ENST00000491581 PTGESO14684 152 aa9.87□□□□□ -0.83
HDAC3-211ENST00000491581 TEX28O15482 410 aa9.87□□□□□ -0.83
HDAC3-211ENST00000491581 MEFVO15553 781 aaPredicted RBP9.87□□□□□ -0.83
HDAC3-211ENST00000491581 ADAM12O43184 909 aa9.87□□□□□ -0.83
HDAC3-211ENST00000491581 DKC1O60832 514 aaKnown RBP eCLIP9.87□□□□□ -0.83
HDAC3-211ENST00000491581 DGAT1O75907 488 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms