RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 POLR2DO15514 142 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 SLC34A2O95436 690 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 ITGA4P13612 1032 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 BMPR1AP36894 532 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 NT5DC1Q5TFE4 455 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 ATF7IP2Q5U623 682 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 GLB1LQ6UWU2 654 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 AGMOQ6ZNB7 445 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 HACE1Q8IYU2 909 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 PYM1Q9BRP8 204 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 ADPGKQ9BRR6 497 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 MRPL9Q9BYD2 267 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 MRPL4Q9BYD3 311 aaKnown RBP17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 RSAD1Q9HA92 442 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 MAGEF1Q9HAY2 307 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 GDPD2Q9HCC8 539 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 USP20Q9Y2K6 914 aa17.91■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 C5orf67F2Z3F1 127 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 K7ENM7 598 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 TRAK2O60296 914 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 RB1P06400 928 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 MAPTP10636 758 aaKnown RBP17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 CMA1P23946 247 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 STRN3Q13033 797 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 ADGRE1Q14246 886 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 SPOUT1Q5T280 376 aaKnown RBP17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 DNAJC19Q96DA6 116 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 PLVAPQ9BX97 442 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 LRRC27Q9C0I9 530 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 NXF3Q9H4D5 531 aaKnown RBP17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 CWH43Q9H720 699 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 UBN1Q9NPG3 1134 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 TYW1Q9NV66 732 aaKnown RBP17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 HCSTQ9UBK5 93 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 KCNH3Q9ULD8 1083 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 INPP5FQ9Y2H2 1132 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 HES2Q9Y543 173 aa17.9■□□□□ 0.46
MSH5-SAPCD1-206ENST00000491552 OFD1O75665 1012 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 PFKFB1P16118 471 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 SCP2P22307 547 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 IGFBP4P22692 258 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 AMPD3Q01432 767 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 DCAF4L1Q3SXM0 396 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 NOMO2Q5JPE7 1267 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 EEF1DP3Q658K8 133 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 LRRC55Q6ZSA7 311 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 HAUS6Q7Z4H7 955 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 APBB1IPQ7Z5R6 666 aaPredicted RBP17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 SFR1Q86XK3 245 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 FAM178BQ8IXR5 827 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 URGCPQ8TCY9 931 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 STAMQ92783 540 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 KCNN1Q92952 543 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 ACO2Q99798 780 aaKnown RBP17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 C11orf84Q9BUA3 381 aaPredicted RBP17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 APOL6Q9BWW8 343 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 AAASQ9NRG9 546 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 KBTBD4Q9NVX7 518 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 SEL1LQ9UBV2 794 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 TNFSF13BQ9Y275 285 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 CHD9Q3L8U1 2897 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 TCHHQ07283 1943 aa17.89■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 A0A1B0GVL5 298 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 H3BNC9 293 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 GTPBP6O43824 516 aaPredicted RBP17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 LPXNO60711 386 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 IDEP14735 1019 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 GAP43P17677 238 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 LAG3P18627 525 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 GPM6BQ13491 265 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 COLGALT1Q8NBJ5 622 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 SLC17A8Q8NDX2 589 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 P2RX5Q93086 422 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 FIZ1Q96SL8 496 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 TARS2Q9BW92 718 aaKnown RBP17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 RNF39Q9H2S5 420 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 GIT1Q9Y2X7 761 aa17.88■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQ27 194 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQ64 194 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQD8 194 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 FRMD3A2A2Y4 597 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 NMT1P30419 496 aaKnown RBP17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 ABCD1P33897 745 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 MLH1P40692 756 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 ZNF568Q3ZCX4 644 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 CEP57L1Q8IYX8 460 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 TRIM9Q9C026 710 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 TBC1D13Q9NVG8 400 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 CHMP5Q9NZZ3 219 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 PARP2Q9UGN5 583 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 TBX20Q9UMR3 447 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 HPSEQ9Y251 543 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 PCDHB12Q9Y5F1 795 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 ZMYM2Q9UBW7 1377 aa17.87■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 FAM237AA0A1B0GTK4 181 aa17.86■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 INPPL1O15357 1258 aa17.86■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 POU3F3P20264 500 aaPredicted RBP17.86■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 PROZP22891 400 aa17.86■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 AKAP5P24588 427 aa17.86■□□□□ 0.45
MSH5-SAPCD1-206ENST00000491552 RNASELQ05823 741 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms