RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 NPTX2P47972 431 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 SLC11A1P49279 550 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 PLCB3Q01970 1234 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 FAM187BQ17R55 369 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 TAS1R3Q7RTX0 852 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 RBM23Q86U06 439 aaKnown RBP20.02■□□□□ 0.8
COL9A3-214ENST00000490398 SYT2Q8N9I0 419 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-214ENST00000490398 MRPS27Q92552 414 aaKnown RBP20.02■□□□□ 0.8
COL9A3-214ENST00000490398 EPSTI1Q96J88 318 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 GAD1Q99259 594 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 MRPL9Q9BYD2 267 aaKnown RBP20.02■□□□□ 0.8
COL9A3-214ENST00000490398 C2orf40Q9H1Z8 148 aa20.02■□□□□ 0.8
COL9A3-214ENST00000490398 ACKR2O00590 384 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 FSCN2O14926 492 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 BMP15O95972 392 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 GALTP07902 379 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 PLCG1P19174 1290 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 LONP1P36776 959 aaKnown RBP20.01■□□□□ 0.79
COL9A3-214ENST00000490398 MLH1P40692 756 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 UBA7P41226 1012 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 RBM10P98175 930 aaKnown RBP20.01■□□□□ 0.79
COL9A3-214ENST00000490398 PRPF4BQ13523 1007 aaKnown RBP20.01■□□□□ 0.79
COL9A3-214ENST00000490398 PKP1Q13835 747 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 CTC1Q2NKJ3 1217 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 SLC27A1Q6PCB7 646 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 EP400NLQ6ZTU2 488 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-214ENST00000490398 PABPC5Q96DU9 382 aaKnown RBP20.01■□□□□ 0.79
COL9A3-214ENST00000490398 CDK5RAP3Q96JB5 506 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 IFT74Q96LB3 600 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 PRIMPOLQ96LW4 560 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 NT5C3AQ9H0P0 336 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 TLR9Q9NR96 1032 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 CLDND1Q9NY35 253 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 SPG21Q9NZD8 308 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 KLK14Q9P0G3 267 aa20.01■□□□□ 0.79
COL9A3-214ENST00000490398 C5orf42Q9H799 3197 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 ARL5CA6NH57 179 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 CCDC169A6NNP5 214 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 HIDE1A8MVS5 230 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 PER2O15055 1255 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 GUCY2CP25092 1073 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 NRIP1P48552 1158 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 SCNN1GP51170 649 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 UBE3AQ05086 875 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 NCBP1Q09161 790 aaKnown RBP20■□□□□ 0.79
COL9A3-214ENST00000490398 DHX8Q14562 1220 aaKnown RBP20■□□□□ 0.79
COL9A3-214ENST00000490398 PPP2R5AQ15172 486 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 MAPK6Q16659 721 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 PLPP4Q5VZY2 271 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 CNNM3Q8NE01 707 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 GSTCDQ8NEC7 633 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 MICAL1Q8TDZ2 1067 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 ADAMTS19Q8TE59 1207 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 VN1R3Q9BXE9 311 aa20■□□□□ 0.79
COL9A3-214ENST00000490398 TBX10O75333 385 aa19.99■□□□□ 0.79
COL9A3-214ENST00000490398 RNASELQ05823 741 aaKnown RBP19.99■□□□□ 0.79
COL9A3-214ENST00000490398 MCM6Q14566 821 aa19.99■□□□□ 0.79
COL9A3-214ENST00000490398 CSPP1Q1MSJ5 1256 aa19.99■□□□□ 0.79
COL9A3-214ENST00000490398 VN1R2Q8NFZ6 395 aa19.99■□□□□ 0.79
COL9A3-214ENST00000490398 URGCPQ8TCY9 931 aa19.99■□□□□ 0.79
COL9A3-214ENST00000490398 TCF25Q9BQ70 676 aa19.99■□□□□ 0.79
COL9A3-214ENST00000490398 TRIM6Q9C030 488 aaPredicted RBP19.99■□□□□ 0.79
COL9A3-214ENST00000490398 ZSCAN16Q9H4T2 348 aaPredicted RBP19.99■□□□□ 0.79
COL9A3-214ENST00000490398 TFIP11Q9UBB9 837 aaKnown RBP19.99■□□□□ 0.79
COL9A3-214ENST00000490398 LZTS1Q9Y250 596 aa19.99■□□□□ 0.79
COL9A3-214ENST00000490398 SRPRBQ9Y5M8 271 aaKnown RBP19.99■□□□□ 0.79
COL9A3-214ENST00000490398 F8W810 466 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 INPPL1O15357 1258 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 SLC16A4O15374 487 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 GLP2RO95838 553 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 PPM1AP35813 382 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 ALDH7A1P49419 539 aaKnown RBP19.98■□□□□ 0.79
COL9A3-214ENST00000490398 ADAM15Q13444 863 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 CLUL1Q15846 466 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 FOXD4L6Q3SYB3 417 aaPredicted RBP19.98■□□□□ 0.79
COL9A3-214ENST00000490398 LEXMQ3ZCV2 418 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 FOXD4L3Q6VB84 417 aaPredicted RBP19.98■□□□□ 0.79
COL9A3-214ENST00000490398 AUTS2Q8WXX7 1259 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 SYMPKQ92797 1274 aaKnown RBP19.98■□□□□ 0.79
COL9A3-214ENST00000490398 CALML4Q96GE6 196 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 IGSF21Q96ID5 467 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 SNTG2Q9NY99 539 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 ARHGAP28Q9P2N2 729 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 CACNG4Q9UBN1 327 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 PARP2Q9UGN5 583 aa19.98■□□□□ 0.79
COL9A3-214ENST00000490398 NRP1O14786 923 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 SLC39A14Q15043 492 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 GPBP1Q86WP2 473 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 COLGALT2Q8IYK4 626 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 RAD54LQ92698 747 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 DRC1Q96MC2 740 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 CCSER1Q9C0I3 900 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 UBN1Q9NPG3 1134 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 KMT5AQ9NQR1 393 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 MARCH5Q9NX47 278 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 GIT1Q9Y2X7 761 aa19.97■□□□□ 0.79
COL9A3-214ENST00000490398 TCF20Q9UGU0 1960 aaKnown RBP19.97■□□□□ 0.79
COL9A3-214ENST00000490398 A0A087X0B3 334 aa19.96■□□□□ 0.79
COL9A3-214ENST00000490398 K7ERI5 159 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms