RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 CCDC22O60826 627 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CDH16O75309 829 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ADCY8P40145 1251 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 RRP1BQ14684 758 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CMPK2Q5EBM0 449 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 SEC14L1Q92503 715 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TIPINQ9BVW5 301 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 NPHS2Q9NP85 383 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 UBN1Q9NPG3 1134 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TMCO1Q9UM00 188 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CHMP2BQ9UQN3 213 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 RTCBQ9Y3I0 505 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 LAMB4A4D0S4 1761 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 A0A0G2JND7 137 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 EXOC1LA0A1B0GW35 172 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ANKRD62A6NC57 917 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 FAM196BA6NMK8 535 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 FOXO6A8MYZ6 492 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TMCC1O94876 653 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TMEM253P0C7T8 217 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ESRRAP11474 423 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 DRG2P55039 364 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 SGO2Q562F6 1265 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CAVIN4Q5BKX8 364 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 DAB2IPQ5VWQ8 1189 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 VSTM1Q6UX27 236 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CAPN12Q6ZSI9 719 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 NLRP9Q7RTR0 991 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 KRT28Q7Z3Y7 464 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TRIM42Q8IWZ5 723 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 FAM161BQ96MY7 647 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 BRIP1Q9BX63 1249 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TXLNGYQ9BZA5 131 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 NDE1Q9NXR1 346 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 BARHL2Q9NY43 387 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ANAPC5Q9UJX4 755 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TBCAO75347 108 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 KRT17Q04695 432 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ACVR2BQ13705 512 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CTTNQ14247 550 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 AADACL2Q6P093 401 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 GJB7Q6PEY0 223 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 POTEAQ6S8J7 498 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 RNF207Q6ZRF8 634 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CYFIP1Q7L576 1253 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ENDOVQ8N8Q3 282 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 SYT2Q8N9I0 419 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 MARCH10Q8NA82 808 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 UTP4Q969X6 686 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ZNF184Q99676 751 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TUBB6Q9BUF5 446 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 EPB41L4BQ9H329 900 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 SYNCQ9H7C4 482 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 METTL14Q9HCE5 456 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 PREBQ9HCU5 417 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 BLOC1S4Q9NUP1 217 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 NRAPQ86VF7 1730 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 DDX60Q8IY21 1712 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PHRF1Q9P1Y6 1649 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 CASZ1Q86V15 1759 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 WDR91A4D1P6 747 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 DDX3XO00571 662 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PSMG1O95456 288 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 GGPS1O95749 300 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 ABCD1P33897 745 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 MAGEA8P43361 318 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 LMNB2Q03252 620 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 THOC5Q13769 683 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 CNPY1Q3B7I2 92 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 IZUMO2Q6UXV1 221 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PPP4R3CPQ6ZMV5 832 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 GSTA5Q7RTV2 222 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 IRF2BP2Q7Z5L9 587 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 RHOT2Q8IXI1 618 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 SMC1BQ8NDV3 1235 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 SNRNP27Q8WVK2 155 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 TTC1Q99614 292 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 CPVLQ9H3G5 476 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 GRHL1Q9NZI5 618 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 RPL26L1Q9UNX3 145 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 CHKBQ9Y259 395 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 TNS3Q68CZ2 1445 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PLCH1Q4KWH8 1693 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 KLRF2D3W0D1 207 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 HNRNPRO43390 633 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 DLATP10515 647 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 CYP2D6P10635 497 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 TAC1P20366 129 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 COILP38432 576 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PSMC4P43686 418 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 USP46P62068 366 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 KHDC1Q4VXA5 237 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 ZCWPW2Q504Y3 356 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 UBAP2Q5T6F2 1119 aaKnown RBP6.66□□□□□ -1.34
VPS13D-209ENST00000487188 OR52E8Q6IFG1 317 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 NLRP10Q86W26 655 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 NCAPG2Q86XI2 1143 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PTPRN2Q92932 1015 aa6.66□□□□□ -1.34
VPS13D-209ENST00000487188 PLEKHG4BQ96PX9 1271 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms