RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 HAUS1Q96CS2 278 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 RUNDC3BQ96NL0 473 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 GBP5Q96PP8 586 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 SEPT10Q9P0V9 454 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 MRC1P22897 1456 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 NRXN3Q9Y4C0 1643 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 PPP1R37O75864 691 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 UCHL3P15374 230 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 MAN1A1P33908 653 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 RHBDL3P58872 404 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 DR1Q01658 176 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 LMNB2Q03252 620 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 ZNF699Q32M78 642 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 DSTYKQ6XUX3 929 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 RNF149Q8NC42 400 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 ICAM1P05362 532 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 HNRNPH1P31943 449 aaKnown RBP11.78□□□□□ -0.52
HDAC6-228ENST00000486227 IFNAR2P48551 515 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 ZNF211Q13398 564 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-228ENST00000486227 CYP4F22Q6NT55 531 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 WDR93Q6P2C0 686 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 CCDC13Q8IYE1 715 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 VPS52Q8N1B4 723 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 SYT2Q8N9I0 419 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-228ENST00000486227 NOA1Q8NC60 698 aaKnown RBP11.78□□□□□ -0.52
HDAC6-228ENST00000486227 PNKPQ96T60 521 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 GINM1Q9NU53 330 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 SLC25A27O95847 323 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 CYP2B6P20813 491 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 TMEM35BQ8NCS4 154 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 LRRN4CLQ8ND94 238 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 ANKS1AQ92625 1134 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 ATP6V1G3Q96LB4 118 aa11.78□□□□□ -0.52
HDAC6-228ENST00000486227 MRPL4Q9BYD3 311 aaKnown RBP11.78□□□□□ -0.52
HDAC6-228ENST00000486227 RSPH10B2B2RC85 870 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 CCDC188H7C350 402 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 SMIM24O75264 130 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 RSPH10BP0C881 870 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 FMO5P49326 533 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 NCAPHQ15003 741 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 CCDC62Q6P9F0 684 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 GPRC5AQ8NFJ5 357 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 OR6B3Q8NGW1 331 aa11.77□□□□□ -0.52
HDAC6-228ENST00000486227 POLR3CQ9BUI4 534 aaPredicted RBP11.77□□□□□ -0.52
HDAC6-228ENST00000486227 POC1B-GALNT4F8VUJ3 575 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SLC16A3O15427 465 aaKnown RBP11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SLC26A4O43511 780 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 ARP10275 920 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 PLS3P13797 630 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 PHBP35232 272 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SREBF1P36956 1147 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 ACOT2P49753 483 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SCYL3Q8IZE3 742 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 RIN2Q8WYP3 895 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-228ENST00000486227 NBPF12Q5TAG4 269 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-228ENST00000486227 RINT1Q6NUQ1 792 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 TRIM65Q6PJ69 517 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 CERS5Q8N5B7 392 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 GSDMBQ8TAX9 411 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 RUSC1Q9BVN2 902 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 C2orf40Q9H1Z8 148 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 EPN3Q9H201 632 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 ANAPC5Q9UJX4 755 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 INPP5FQ9Y2H2 1132 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 MAD1L1Q9Y6D9 718 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 ATP8B3O60423 1300 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 MIF4GDA9UHW6 222 aaKnown RBP11.77□□□□□ -0.53
HDAC6-228ENST00000486227 CYP26A1O43174 497 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SLURP2P0DP57 97 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SLC30A10Q6XR72 485 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 ARMCX2Q7L311 632 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 GBP7Q8N8V2 638 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SPATA4Q8NEY3 305 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SEPT1Q8WYJ6 367 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 FMO2Q99518 471 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 HEMGNQ9BXL5 484 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 MTIF3Q9H2K0 278 aaKnown RBP11.77□□□□□ -0.53
HDAC6-228ENST00000486227 LRRC4Q9HBW1 653 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 KCND2Q9NZV8 630 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 SCINQ9Y6U3 715 aa11.77□□□□□ -0.53
HDAC6-228ENST00000486227 MED1Q15648 1581 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 ESYT3A0FGR9 886 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 SASH3O75995 380 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TM4SF1P30408 202 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 GPC3P51654 580 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 GTF2A2P52657 109 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 PRKCEQ02156 737 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TNFAIP2Q03169 654 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 SLC18A3Q16572 532 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 PHLDB3Q6NSJ2 640 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TEX2Q8IWB9 1127 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 CCDC110Q8TBZ0 833 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TRIM4Q9C037 500 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 UNC45AQ9H3U1 944 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 SLC24A3Q9HC58 644 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 NGRNQ9NPE2 291 aaKnown RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 SNX24Q9Y343 169 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 A0A087X0B3 334 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 KBTBD13C9JR72 458 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 C6orf222P0C671 652 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms