RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 COG5Q9UP83 839 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 C10orf71Q711Q0 1435 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 CLIC2O15247 247 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 TTLL1O95922 423 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 PDE6BP35913 854 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 STAT3P40763 770 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 TTC27Q6P3X3 843 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 OTUD6AQ7L8S5 288 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 CATSPER3Q86XQ3 398 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 FITM2Q8N6M3 262 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 SH3GL3Q99963 347 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 KIF9Q9HAQ2 790 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 CTTNBP2NLQ9P2B4 639 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 PRKAG3Q9UGI9 489 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 STK24Q9Y6E0 443 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 FRMPD4Q14CM0 1322 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 PPP1R11O60927 126 aaPredicted RBP14.27□□□□□ -0.12
USP40-214ENST00000483519 HIP1RO75146 1068 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 PEX19P40855 299 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 FMO5P49326 533 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 CCDC15Q0P6D6 951 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 TAF11Q15544 211 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 CYP1B1Q16678 543 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 LONRF1Q17RB8 773 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 RNF43Q68DV7 783 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 AADACL2Q6P093 401 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 GRAMD1AQ96CP6 724 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 TXLNGQ9NUQ3 528 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 PNMA3Q9UL41 463 aa14.27□□□□□ -0.12
USP40-214ENST00000483519 MYO3BQ8WXR4 1341 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 LMNB2Q03252 620 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 ZNF543Q08ER8 600 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 VSTM1Q6UX27 236 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 ANKRD42Q8N9B4 389 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 MORC4Q8TE76 937 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 BORCS6Q96GS4 357 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 UIMC1Q96RL1 719 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 TGS1Q96RS0 853 aaKnown RBP14.27□□□□□ -0.13
USP40-214ENST00000483519 RPS6KC1Q96S38 1066 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 CDC42EP4Q9H3Q1 356 aaKnown RBP14.27□□□□□ -0.13
USP40-214ENST00000483519 KCNK9Q9NPC2 374 aa14.27□□□□□ -0.13
USP40-214ENST00000483519 ZBTB5O15062 677 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 UNC5CO95185 931 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 RPA1P27694 616 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 COILP38432 576 aaPredicted RBP14.26□□□□□ -0.13
USP40-214ENST00000483519 ACVR2BQ13705 512 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 TCEAL1Q15170 157 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 GRIK5Q16478 980 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 KRT35Q92764 455 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 MKNK1Q9BUB5 465 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 TAS2R14Q9NYV8 317 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 APEX2Q9UBZ4 518 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 CYP3A7-CYP3A51PA0A087WV96 503 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 ECEL1O95672 775 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 RFX1P22670 979 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 CYP3A7P24462 503 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 STX2P32856 288 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 RRP1BQ14684 758 aaKnown RBP14.26□□□□□ -0.13
USP40-214ENST00000483519 KIF22Q14807 665 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 MOXD1Q6UVY6 613 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 ARHGEF18Q6ZSZ5 1173 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 ZNF804AQ7Z570 1209 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 NAF1Q96HR8 494 aaKnown RBP14.26□□□□□ -0.13
USP40-214ENST00000483519 GPR88Q9GZN0 384 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 WNT8AQ9H1J5 351 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 PTPN22Q9Y2R2 807 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 NRXN2Q9P2S2 1712 aa14.26□□□□□ -0.13
USP40-214ENST00000483519 GPR75-ASB3A0A0A6YYF3 556 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 E7ENQ6 273 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 MEIS1O00470 390 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 EIF3DO15371 548 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP40-214ENST00000483519 ATP5HO75947 161 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 GAP43P17677 238 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 CDC25CP30307 473 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 PSMC6P62333 389 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 NFIL3Q16649 462 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 ZNF568Q3ZCX4 644 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 PRR5LQ6MZQ0 368 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 MAGEB18Q96M61 343 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 MBOAT7Q96N66 472 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 INTS2Q9H0H0 1204 aaKnown RBP14.25□□□□□ -0.13
USP40-214ENST00000483519 ETNK1Q9HBU6 452 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 OLFML3Q9NRN5 406 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 WHRNQ9P202 907 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 ZFATQ9P243 1243 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 ANKIB1Q9P2G1 1089 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 TMEM110-MUSTN1A8MSY1 372 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 ACSL3O95573 720 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 MARCKSL1P49006 195 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 CTTNQ14247 550 aaKnown RBP14.25□□□□□ -0.13
USP40-214ENST00000483519 GPATCH4Q5T3I0 446 aaKnown RBP14.25□□□□□ -0.13
USP40-214ENST00000483519 INTS8Q75QN2 995 aaKnown RBP14.25□□□□□ -0.13
USP40-214ENST00000483519 GDAP1Q8TB36 358 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 RMDN2Q96LZ7 410 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 AGPAT1Q99943 283 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 OSBPL1AQ9BXW6 950 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 ANO3Q9BYT9 981 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 NKIRAS1Q9NYS0 192 aa14.25□□□□□ -0.13
USP40-214ENST00000483519 ANKRD63C9JTQ0 380 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 TGFB1I1O43294 461 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms