RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 CCDC148Q8NFR7 591 aa19.23■□□□□ 0.67
VIM-204ENST00000478746 PJA1Q8NG27 643 aa19.23■□□□□ 0.67
VIM-204ENST00000478746 PHKBQ93100 1093 aa19.23■□□□□ 0.67
VIM-204ENST00000478746 YTHDC1Q96MU7 727 aaKnown RBP19.23■□□□□ 0.67
VIM-204ENST00000478746 PRKD2Q9BZL6 878 aa19.23■□□□□ 0.67
VIM-204ENST00000478746 FOXQ1Q9C009 403 aa19.23■□□□□ 0.67
VIM-204ENST00000478746 POTEMA6NI47 508 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 NR1I2O75469 434 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 PAPLNO95428 1278 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 EFEMP2O95967 443 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 C1RP00736 705 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 HMGB1P09429 215 aaKnown RBP19.22■□□□□ 0.67
VIM-204ENST00000478746 GLULP15104 373 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 STARD6P59095 220 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 PSMC5P62195 406 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 HTR4Q13639 388 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 KRT32Q14532 448 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 PLA2G4FQ68DD2 849 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 POTEGQ6S5H5 508 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 B3GNT9Q6UX72 402 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 RNF168Q8IYW5 571 aaPredicted RBP19.22■□□□□ 0.67
VIM-204ENST00000478746 ST13P5Q8NFI4 369 aaPredicted RBP19.22■□□□□ 0.67
VIM-204ENST00000478746 TBCKQ8TEA7 893 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 PRPF31Q8WWY3 499 aaKnown RBP19.22■□□□□ 0.67
VIM-204ENST00000478746 BORCS6Q96GS4 357 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 MINDY3Q9H8M7 445 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 ZDHHC7Q9NXF8 308 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 NUMBLQ9Y6R0 609 aa19.22■□□□□ 0.67
VIM-204ENST00000478746 MTCL1Q9Y4B5 1905 aaKnown RBP19.21■□□□□ 0.67
VIM-204ENST00000478746 TGM5O43548 720 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 EXOC8Q8IYI6 725 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 MAML2Q8IZL2 1156 aaPredicted RBP19.21■□□□□ 0.67
VIM-204ENST00000478746 SMG8Q8ND04 991 aaKnown RBP19.21■□□□□ 0.67
VIM-204ENST00000478746 SLC7A3Q8WY07 619 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 CNTNAP3BQ96NU0 1288 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 COLEC11Q9BWP8 271 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 CNTNAP3Q9BZ76 1288 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 CHST7Q9NS84 486 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 VPS54Q9P1Q0 977 aa19.21■□□□□ 0.67
VIM-204ENST00000478746 ZFP37Q9Y6Q3 630 aaPredicted RBP19.21■□□□□ 0.67
VIM-204ENST00000478746 TPRP12270 2363 aaKnown RBP19.21■□□□□ 0.67
VIM-204ENST00000478746 ARL5CA6NH57 179 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 LRRN2O75325 713 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 KRT37O76014 449 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 NPEPPSP55786 919 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 NLRP5P59047 1200 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 GPC5P78333 572 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 VARS2Q5ST30 1063 aaKnown RBP19.2■□□□□ 0.66
VIM-204ENST00000478746 LILRA6Q6PI73 481 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 GLYCTKQ8IVS8 523 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 PSPC1Q8WXF1 523 aaKnown RBP19.2■□□□□ 0.66
VIM-204ENST00000478746 TMEM143Q96AN5 459 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 GAD1Q99259 594 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 RPP25Q9BUL9 199 aaKnown RBP19.2■□□□□ 0.66
VIM-204ENST00000478746 C22orf23Q9BZE7 217 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.2■□□□□ 0.66
VIM-204ENST00000478746 MIOSQ9NXC5 875 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 NCDNQ9UBB6 729 aa19.2■□□□□ 0.66
VIM-204ENST00000478746 EPG5Q9HCE0 2579 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 CYP3A7-CYP3A51PA0A087WV96 503 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 KANSL1LA0AUZ9 987 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 F8W810 466 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 LAMTOR5O43504 91 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 SDHBP21912 280 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 FSHRP23945 695 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 CYP3A7P24462 503 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 DSC1Q08554 894 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 LAMTOR4Q0VGL1 99 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 SNW1Q13573 536 aaKnown RBP19.19■□□□□ 0.66
VIM-204ENST00000478746 USP41Q3LFD5 358 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 ZNF528Q3MIS6 628 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 Q6ZUG5 572 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 ZNF579Q8NAF0 562 aaKnown RBP19.19■□□□□ 0.66
VIM-204ENST00000478746 BRF1Q92994 677 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 CEP170P1Q96L14 293 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 B3GALT6Q96L58 329 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 SLC26A6Q9BXS9 759 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 BCO2Q9BYV7 579 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 RNF39Q9H2S5 420 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 SPATA6Q9NWH7 488 aaPredicted RBP19.19■□□□□ 0.66
VIM-204ENST00000478746 FNIP2Q9P278 1114 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 IPPQ9Y573 584 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 GPR179Q6PRD1 2367 aa19.19■□□□□ 0.66
VIM-204ENST00000478746 ASAP2O43150 1006 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 DKC1O60832 514 aaKnown RBP eCLIP19.18■□□□□ 0.66
VIM-204ENST00000478746 ZMYND10O75800 440 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 TDP2O95551 362 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 CPA1P15085 419 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 MLH1P40692 756 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 QARSP47897 775 aaKnown RBP19.18■□□□□ 0.66
VIM-204ENST00000478746 SCNN1GP51170 649 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 PARM1Q6UWI2 310 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 GPR65Q8IYL9 337 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 GPR161Q8N6U8 529 aaKnown RBP19.18■□□□□ 0.66
VIM-204ENST00000478746 RNF149Q8NC42 400 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 ETNPPLQ8TBG4 499 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 ATRIPQ8WXE1 791 aa19.18■□□□□ 0.66
VIM-204ENST00000478746 EIF2AQ9BY44 585 aaKnown RBP19.18■□□□□ 0.66
VIM-204ENST00000478746 RNF26Q9BY78 433 aaPredicted RBP19.18■□□□□ 0.66
VIM-204ENST00000478746 GPR62Q9BZJ7 368 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms