RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ARNTLO00327 626 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 MEFVO15553 781 aaPredicted RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 ECI2O75521 394 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 CSDE1O75534 798 aaKnown RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 OFD1O75665 1012 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 C22orf31O95567 290 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 CAVIN2O95810 425 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 SOD2P04179 222 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 ADH1AP07327 375 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 SLC3A2P08195 630 aaKnown RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 CT47B1P0C2W7 299 aaPredicted RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 RPL17P18621 184 aaKnown RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 CCNE1P24864 410 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 SOX9P48436 509 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 IRX4P78413 519 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 UAP1L1Q3KQV9 507 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 NOMO2Q5JPE7 1267 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 CCNI2Q6ZMN8 369 aaPredicted RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 FAM43BQ6ZT52 329 aaPredicted RBP5.52□□□□□ -1.53
USP4-209ENST00000475873 MARCH9Q86YJ5 346 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 MAP4K3Q8IVH8 894 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 LINC01465Q8N7H1 131 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 HDAC7Q8WUI4 952 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 DNASE1L2Q92874 299 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 KIF1BPQ96EK5 621 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 MBOAT7Q96N66 472 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 ZKSCAN3Q9BRR0 538 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 AMNQ9BXJ7 453 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 PLEKHA4Q9H4M7 779 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 TMEM9BQ9NQ34 198 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 CHST12Q9NRB3 414 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 INPP5FQ9Y2H2 1132 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 PIAS3Q9Y6X2 628 aa5.52□□□□□ -1.53
USP4-209ENST00000475873 FBN2P35556 2912 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 VWA8A3KMH1 1905 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 GCOM1H8Y6P7 765 aaPredicted RBP5.51□□□□□ -1.53
USP4-209ENST00000475873 MAN2B1O00754 1011 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 NRP1O14786 923 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 CCL16O15467 120 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 GAS2O43903 313 aaKnown RBP5.51□□□□□ -1.53
USP4-209ENST00000475873 STAM2O75886 525 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 URODP06132 367 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 POLR2MP0CAP2 368 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 CEBPBP17676 345 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 ATP4AP20648 1035 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 ITPKBP27987 946 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 PHKA2P46019 1235 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 CLCN3P51790 818 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 DSG1Q02413 1049 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 CREB5Q02930 508 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 ZMYM1Q5SVZ6 1142 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 PCNX4Q63HM2 1172 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 AGMOQ6ZNB7 445 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 TBC1D10CQ8IV04 446 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 TMEFF1Q8IYR6 380 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 FAM9BQ8IZU0 186 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 FRAT1Q92837 279 aaPredicted RBP5.51□□□□□ -1.53
USP4-209ENST00000475873 MCRS1Q96EZ8 462 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 NACAP1Q9BZK3 213 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 PRORYQ9H606 182 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 ZNF334Q9HCZ1 680 aaPredicted RBP5.51□□□□□ -1.53
USP4-209ENST00000475873 CHST7Q9NS84 486 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 MAP3K20Q9NYL2 800 aaKnown RBP5.51□□□□□ -1.53
USP4-209ENST00000475873 DNMT3BQ9UBC3 853 aaKnown RBP5.51□□□□□ -1.53
USP4-209ENST00000475873 FBXW11Q9UKB1 542 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 KNTC1P50748 2209 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 THADAQ6YHU6 1953 aa5.51□□□□□ -1.53
USP4-209ENST00000475873 NEDD4P46934 1319 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 MUC22E2RYF6 1773 aaPredicted RBP5.5□□□□□ -1.53
USP4-209ENST00000475873 USP9YO00507 2555 aaPredicted RBP5.5□□□□□ -1.53
USP4-209ENST00000475873 IGKV6D-21A0A0A0MT36 114 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 CCDC194A0A1B0GVG4 234 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 ADAM12O43184 909 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 SMARCA5O60264 1052 aaPredicted RBP5.5□□□□□ -1.53
USP4-209ENST00000475873 EIF5BO60841 1220 aaKnown RBP5.5□□□□□ -1.53
USP4-209ENST00000475873 GLUD2P49448 558 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 NLRP11P59045 1033 aaKnown RBP5.5□□□□□ -1.53
USP4-209ENST00000475873 SEMA3BQ13214 749 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 CCINQ13939 588 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 ODR4Q5SWX8 454 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 VITQ6UXI7 678 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 PLPPR4Q7Z2D5 763 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 ZNF513Q8N8E2 541 aaPredicted RBP5.5□□□□□ -1.53
USP4-209ENST00000475873 PNPLA1Q8N8W4 532 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 PNMA1Q8ND90 353 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 ELSPBP1Q96BH3 223 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 GPRASP2Q96D09 838 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 TTC14Q96N46 770 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 GPR62Q9BZJ7 368 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 SEMA4CQ9C0C4 833 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 TOMM22Q9NS69 142 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 KCNK4Q9NYG8 393 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 DKK4Q9UBT3 224 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 PRG3Q9Y2Y8 225 aaPredicted RBP5.5□□□□□ -1.53
USP4-209ENST00000475873 ADAMTS9Q9P2N4 1935 aa5.5□□□□□ -1.53
USP4-209ENST00000475873 TNRC6BQ9UPQ9 1833 aaKnown RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.49□□□□□ -1.53
USP4-209ENST00000475873 CCDC163A0A0D9SF12 145 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 MEIS2O14770 477 aa5.49□□□□□ -1.53
USP4-209ENST00000475873 ZBTB5O15062 677 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms