RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-222ENST00000473373 LRRC55Q6ZSA7 311 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 APBB1IPQ7Z5R6 666 aaPredicted RBP12.73□□□□□ -0.37
CPNE1-222ENST00000473373 ZNF598Q86UK7 904 aaKnown RBP12.73□□□□□ -0.37
CPNE1-222ENST00000473373 CABP7Q86V35 215 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 FAM178BQ8IXR5 827 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 DRC1Q96MC2 740 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 TRAIPQ9BWF2 469 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 EIF2AQ9BY44 585 aaKnown RBP12.73□□□□□ -0.37
CPNE1-222ENST00000473373 CSRNP2Q9H175 543 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 POLD4Q9HCU8 107 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 RNF19AQ9NV58 838 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 TBC1D13Q9NVG8 400 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 IPPQ9Y573 584 aa12.73□□□□□ -0.37
CPNE1-222ENST00000473373 FSD2A1L4K1 749 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 MEIS3P2A8K0S8 358 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 N4BP3O15049 544 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 B4GALT5O43286 388 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 ZNF623O75123 536 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 KRT18P05783 430 aaKnown RBP12.72□□□□□ -0.37
CPNE1-222ENST00000473373 IL9P15248 144 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 NCLP19338 710 aaKnown RBP12.72□□□□□ -0.37
CPNE1-222ENST00000473373 DNAJB1P25685 340 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 TXLNAP40222 546 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 MLH1P40692 756 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 MATR3P43243 847 aaKnown RBP eCLIP12.72□□□□□ -0.37
CPNE1-222ENST00000473373 PEX3P56589 373 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 RAD51AP2Q09MP3 1159 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 HYAL1Q12794 435 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 SF3A1Q15459 793 aaKnown RBP12.72□□□□□ -0.37
CPNE1-222ENST00000473373 PUS10Q3MIT2 529 aaKnown RBP12.72□□□□□ -0.37
CPNE1-222ENST00000473373 LEXMQ3ZCV2 418 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 SLC27A1Q6PCB7 646 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 ADGRD2Q7Z7M1 963 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 PRIMPOLQ96LW4 560 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 NFKBIZQ9BYH8 718 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 KMT5AQ9NQR1 393 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 FAN1Q9Y2M0 1017 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 HES2Q9Y543 173 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 PCDHGC5Q9Y5F6 944 aa12.72□□□□□ -0.37
CPNE1-222ENST00000473373 K7ERI5 159 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 PER2O15055 1255 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 HIP1RO75146 1068 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 OFD1O75665 1012 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 ALDH2P05091 517 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 SYT1P21579 422 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 HOXA11P31270 313 aaPredicted RBP12.71□□□□□ -0.37
CPNE1-222ENST00000473373 GTF2F1P35269 517 aaKnown RBP eCLIP12.71□□□□□ -0.37
CPNE1-222ENST00000473373 OR1G1P47890 313 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 EFNA5P52803 228 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 PLCB3Q01970 1234 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 SMC1AQ14683 1233 aaKnown RBP12.71□□□□□ -0.37
CPNE1-222ENST00000473373 IL17AQ16552 155 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 LLGL2Q6P1M3 1020 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 AGMOQ6ZNB7 445 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 IFNLR1Q8IU57 520 aaPredicted RBP12.71□□□□□ -0.37
CPNE1-222ENST00000473373 INTS4Q96HW7 963 aaKnown RBP12.71□□□□□ -0.37
CPNE1-222ENST00000473373 AK8Q96MA6 479 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 GAD1Q99259 594 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 KIFC3Q9BVG8 833 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 NXF3Q9H4D5 531 aaKnown RBP12.71□□□□□ -0.37
CPNE1-222ENST00000473373 ZHX3Q9H4I2 956 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 NRDE2Q9H7Z3 1164 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 NGRNQ9NPE2 291 aaKnown RBP12.71□□□□□ -0.37
CPNE1-222ENST00000473373 LZTS1Q9Y250 596 aa12.71□□□□□ -0.37
CPNE1-222ENST00000473373 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.7□□□□□ -0.38
CPNE1-222ENST00000473373 PRR33A8MZF0 331 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 LINC01565O15544 149 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 AKAP5P24588 427 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 LONP1P36776 959 aaKnown RBP12.7□□□□□ -0.38
CPNE1-222ENST00000473373 SCNN1GP51170 649 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 SMTNP53814 917 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 ERVFC1P60507 584 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 STRN3Q13033 797 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 UBXN11Q5T124 520 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 FOXD4L5Q5VV16 416 aaPredicted RBP12.7□□□□□ -0.38
CPNE1-222ENST00000473373 VPS52Q8N1B4 723 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 SLC39A11Q8N1S5 342 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 SPRYD3Q8NCJ5 442 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 FOXD4L4Q8WXT5 416 aaPredicted RBP12.7□□□□□ -0.38
CPNE1-222ENST00000473373 BSNDQ8WZ55 320 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 TCHPQ9BT92 498 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 KLK14Q9P0G3 267 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 DNAJB4Q9UDY4 337 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 CCDC39Q9UFE4 941 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 CD207Q9UJ71 328 aa12.7□□□□□ -0.38
CPNE1-222ENST00000473373 PRG3Q9Y2Y8 225 aaPredicted RBP12.7□□□□□ -0.38
CPNE1-222ENST00000473373 PHLPP2Q6ZVD8 1323 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 GRXCR2A6NFK2 248 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 ARL5CA6NH57 179 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 STX6O43752 255 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 CXCL14O95715 111 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 PLA2G4BP0C869 781 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 HARSP12081 509 aaKnown RBP12.69□□□□□ -0.38
CPNE1-222ENST00000473373 MARCKSP29966 332 aaPredicted RBP12.69□□□□□ -0.38
CPNE1-222ENST00000473373 CAMK1Q14012 370 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 CDCA2Q69YH5 1023 aaPredicted RBP12.69□□□□□ -0.38
CPNE1-222ENST00000473373 RINT1Q6NUQ1 792 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 MRPL10Q7Z7H8 261 aaKnown RBP12.69□□□□□ -0.38
CPNE1-222ENST00000473373 EFHBQ8N7U6 833 aa12.69□□□□□ -0.38
CPNE1-222ENST00000473373 SMG8Q8ND04 991 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms