RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NOC2LQ9Y3T9 749 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 F8VZ95 297 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 TGFB2P61812 414 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 DPY19L2Q6NUT2 758 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 INTS8Q75QN2 995 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 B4GALNT4Q76KP1 1039 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 TRIM7Q9C029 511 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 TMEM117Q9H0C3 514 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 A0A1W2PQJ5 194 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 KIF4AO95239 1232 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 IFT20Q8IY31 132 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 LMBR1Q8WVP7 490 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 ATP6V0A4Q9HBG4 840 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 IVNS1ABPQ9Y6Y0 642 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 IGSF9BQ9UPX0 1349 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 STAT5BP51692 787 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 SP2Q02086 613 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 NAB2Q15742 525 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 MOXD1Q6UVY6 613 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 IRF2BP2Q7Z5L9 587 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 SLC16A10Q8TF71 515 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 SPATA33Q96N06 139 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 SELENOSQ9BQE4 189 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 ASIC3Q9UHC3 531 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 ANAPC7Q9UJX3 599 aa14.81□□□□□ -0.04
CCDC88A-211ENST00000471947 ZNF233A6NK53 670 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 CTNNA2P26232 953 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 TCF7P36402 384 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 FKBP1AP62942 108 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 EMC2Q15006 297 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 PCNX4Q63HM2 1172 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 C10orf67Q8IYJ2 551 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 CEP120Q8N960 986 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 LNX1Q8TBB1 728 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 MGARPQ8TDB4 240 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 AFAP1L1Q8TED9 768 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 TSPYL1Q9H0U9 437 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 PDGFCQ9NRA1 345 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 GPRC5DQ9NZD1 345 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 COL5A3P25940 1745 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 SPDYE16A6NNV3 312 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 SART1O43290 800 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 NLRP11P59045 1033 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 PPATQ06203 517 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 DMTNQ08495 405 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 SV2AQ7L0J3 742 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 SEMA4DQ92854 862 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 RNF25Q96BH1 459 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 SLC10A4Q96EP9 437 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 PPANQ9NQ55 473 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 CNOT8Q9UFF9 292 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 SSU72P8A0A1W2PR75 194 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 PIK3CDO00329 1044 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 DSG3P32926 999 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 BRDTQ58F21 947 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 AGPAT1Q99943 283 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 NUP85Q9BW27 656 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 CYP26B1Q9NR63 512 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 CYP39A1Q9NYL5 469 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 RBAKQ9NYW8 714 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 AGO2Q9UKV8 859 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 L1RE1Q9UN81 338 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 NR2E1Q9Y466 385 aa14.8□□□□□ -0.04
CCDC88A-211ENST00000471947 CLDN3O15551 220 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 TXNP10599 105 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 JAK3P52333 1124 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 DCUN1D2Q6PH85 259 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 DPP9Q86TI2 863 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 FAM76AQ8TAV0 307 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 KRT35Q92764 455 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 MLXIPLQ9NP71 852 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 OLFML3Q9NRN5 406 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 MYH7BA7E2Y1 1941 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 PGRMC1O00264 195 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 CTNNA1P35221 906 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 PDCLQ13371 301 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 PAPD7Q5XG87 772 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 VSIG10LQ86VR7 867 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 APOBEC3FQ8IUX4 373 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 RNF169Q8NCN4 708 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 ATG4AQ8WYN0 398 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 KLRG1Q96E93 195 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 BTBD7Q9P203 1132 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 FRMPD4Q14CM0 1322 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 MYH15Q9Y2K3 1946 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 GOLGA6L10A0A0M3HER8 536 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 LMNB1P20700 586 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 PSMC4P43686 418 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 HNRNPH2P55795 449 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 MAPK7Q13164 816 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 HYIQ5T013 277 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 CCNI2Q6ZMN8 369 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 PLEKHO2Q8TD55 490 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 STK33Q9BYT3 514 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 KCND1Q9NSA2 647 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 ODF2LQ9ULJ1 636 aa14.79□□□□□ -0.04
CCDC88A-211ENST00000471947 ATRNL1Q5VV63 1379 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 DHX15O43143 795 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 ZRANB2O95218 330 aaKnown RBP eCLIP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms