RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 THNSL2Q86YJ6 484 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 ZC3H7AQ8IWR0 971 aaKnown RBP5.49□□□□□ -1.53
VPS13A-210ENST00000471439 PTPN18Q99952 460 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 TACO1Q9BSH4 297 aaKnown RBP5.49□□□□□ -1.53
VPS13A-210ENST00000471439 LRFN3Q9BTN0 628 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 C1QTNF1Q9BXJ1 281 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 RIC8BQ9NVN3 520 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 IFT57Q9NWB7 429 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 DLEC1Q9Y238 1755 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 CDH23Q9H251 3354 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 C5orf42Q9H799 3197 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 ANKRD30AQ9BXX3 1397 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 GSG1L2A8MUP6 293 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 EFCAB14O75071 495 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 KLHL18O94889 574 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 CLSTN1O94985 981 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 MYCLP1P12525 358 aaPredicted RBP5.48□□□□□ -1.53
VPS13A-210ENST00000471439 IL2RBP14784 551 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 CANXP27824 592 aaKnown RBP5.48□□□□□ -1.53
VPS13A-210ENST00000471439 LIMS2Q7Z4I7 341 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 LRRTM3Q86VH5 581 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 UBR7Q8N806 425 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 IGDCC4Q8TDY8 1250 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 LCORQ96JN0 433 aaPredicted RBP5.48□□□□□ -1.53
VPS13A-210ENST00000471439 TMEM168Q9H0V1 697 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 KCND1Q9NSA2 647 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 ARHGAP20Q9P2F6 1191 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 STAP2Q9UGK3 403 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 PTPN22Q9Y2R2 807 aa5.48□□□□□ -1.53
VPS13A-210ENST00000471439 FLNBO75369 2602 aaKnown RBP5.48□□□□□ -1.53
VPS13A-210ENST00000471439 YTHDC2Q9H6S0 1430 aaKnown RBP5.48□□□□□ -1.53
VPS13A-210ENST00000471439 TPRP12270 2363 aaKnown RBP5.47□□□□□ -1.53
VPS13A-210ENST00000471439 PDE8AO60658 829 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 KNG1P01042 644 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 HMGB2P26583 209 aaKnown RBP5.47□□□□□ -1.53
VPS13A-210ENST00000471439 ST5P78524 1137 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 DBPQ10586 325 aaPredicted RBP5.47□□□□□ -1.53
VPS13A-210ENST00000471439 EFEMP1Q12805 493 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 FIGNQ5HY92 759 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 MAFAQ8NHW3 353 aaPredicted RBP5.47□□□□□ -1.53
VPS13A-210ENST00000471439 MAGEB10Q96LZ2 347 aaPredicted RBP5.47□□□□□ -1.53
VPS13A-210ENST00000471439 RBM15Q96T37 977 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS13A-210ENST00000471439 FTSJ1Q9UET6 329 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 ATP23Q9Y6H3 246 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 WDFY4Q6ZS81 3184 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 ZNF541Q9H0D2 1346 aa5.47□□□□□ -1.53
VPS13A-210ENST00000471439 PRAMEF25A6NGN4 478 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 C9orf118A6NHY6 69 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 OPA1O60313 960 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 DNAJC6O75061 913 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 C4BPAP04003 597 aaKnown RBP5.46□□□□□ -1.54
VPS13A-210ENST00000471439 ITGB3P05106 788 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 HUNKP57058 714 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 PCBP1Q15365 356 aaKnown RBP eCLIP5.46□□□□□ -1.546e-6■□□□□ 8.7
VPS13A-210ENST00000471439 SMAD2Q15796 467 aaKnown RBP5.46□□□□□ -1.54
VPS13A-210ENST00000471439 SEPT7Q16181 437 aaKnown RBP5.46□□□□□ -1.54
VPS13A-210ENST00000471439 PKN3Q6P5Z2 889 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 HHIPL2Q6UWX4 724 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 C16orf59Q7L2K0 433 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 RNF180Q86T96 592 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 NOSTRINQ8IVI9 506 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 KBTBD2Q8IY47 623 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 LGI4Q8N135 537 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 WRNIP1Q96S55 665 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 SSBP3Q9BWW4 388 aaPredicted RBP5.46□□□□□ -1.54
VPS13A-210ENST00000471439 MAGEC2Q9UBF1 373 aaPredicted RBP5.46□□□□□ -1.54
VPS13A-210ENST00000471439 TTC21AQ8NDW8 1320 aa5.46□□□□□ -1.54
VPS13A-210ENST00000471439 PALLDQ8WX93 1383 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 NAV2Q8IVL1 2488 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 K7ESM1 405 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 SCDO00767 359 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 KPNA6O60684 536 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 GLRX3O76003 335 aaKnown RBP5.45□□□□□ -1.54
VPS13A-210ENST00000471439 PLATP00750 562 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 MMEP08473 750 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 ENO2P09104 434 aaPredicted RBP5.45□□□□□ -1.54
VPS13A-210ENST00000471439 VIL1P09327 827 aaKnown RBP5.45□□□□□ -1.54
VPS13A-210ENST00000471439 JMJD7P0C870 316 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 ZNF888P0CJ79 500 aaPredicted RBP5.45□□□□□ -1.54
VPS13A-210ENST00000471439 GYS1P13807 737 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 POU3F3P20264 500 aaPredicted RBP5.45□□□□□ -1.54
VPS13A-210ENST00000471439 IGFALSP35858 605 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 STAT3P40763 770 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 KIAA2012Q0VF49 1180 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 NFATC3Q12968 1075 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 CRY1Q16526 586 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 LRIT3Q3SXY7 679 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 FAM47CQ5HY64 1035 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 RNF187Q5TA31 235 aaPredicted RBP5.45□□□□□ -1.54
VPS13A-210ENST00000471439 BORAQ6PGQ7 559 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 OVCH1Q7RTY7 1134 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 IGSF22Q8N9C0 903 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 PRAM1Q96QH2 718 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 KRTAP3-1Q9BYR8 98 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 SPC25Q9HBM1 224 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 INTS7Q9NVH2 962 aaKnown RBP5.45□□□□□ -1.54
VPS13A-210ENST00000471439 PPP4R1LQ9P1A2 415 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 BTBD7Q9P203 1132 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 ZDHHC9Q9Y397 364 aa5.45□□□□□ -1.54
VPS13A-210ENST00000471439 PRKAB1Q9Y478 270 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms