RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 NFKBIZQ9BYH8 718 aa19.44■□□□□ 0.7
COL7A1-208ENST00000470076 CSRNP2Q9H175 543 aa19.44■□□□□ 0.7
COL7A1-208ENST00000470076 WNT7AO00755 349 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 FOSBP53539 338 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 MBTD1Q05BQ5 628 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 SAFBQ15424 915 aaKnown RBP eCLIP19.43■□□□□ 0.7
COL7A1-208ENST00000470076 CABP7Q86V35 215 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 ALYREFQ86V81 257 aaKnown RBP19.43■□□□□ 0.7
COL7A1-208ENST00000470076 HACE1Q8IYU2 909 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 C12orf76Q8N812 135 aaPredicted RBP19.43■□□□□ 0.7
COL7A1-208ENST00000470076 ASAP3Q8TDY4 903 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 ASIC4Q96FT7 647 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 CPB2Q96IY4 423 aa19.43■□□□□ 0.7
COL7A1-208ENST00000470076 MRPL17Q9NRX2 175 aaKnown RBP19.43■□□□□ 0.7
COL7A1-208ENST00000470076 TDRD15B5MCY1 1934 aaKnown RBP19.43■□□□□ 0.7
COL7A1-208ENST00000470076 ARL5CA6NH57 179 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 C2CD4DB7Z1M9 353 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 GLRA2P23416 452 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 KLRC2P26717 231 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 AMHR2Q16671 573 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 COLGALT2Q8IYK4 626 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 PIGOQ8TEQ8 1089 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 KLHL5Q96PQ7 755 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 GAD1Q99259 594 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 TRIM6Q9C030 488 aaPredicted RBP19.42■□□□□ 0.7
COL7A1-208ENST00000470076 SFXN1Q9H9B4 322 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 SORCS3Q9UPU3 1222 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 USTQ9Y2C2 406 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 SSX2IPQ9Y2D8 614 aa19.42■□□□□ 0.7
COL7A1-208ENST00000470076 POTEMA6NI47 508 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 LILRB3O75022 631 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 NR1I2O75469 434 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 SOD2P04179 222 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 SSBP05455 408 aaKnown RBP eCLIP19.41■□□□□ 0.7
COL7A1-208ENST00000470076 URODP06132 367 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 CNPP09543 421 aaKnown RBP19.41■□□□□ 0.7
COL7A1-208ENST00000470076 WEE2P0C1S8 567 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 ARF4P18085 180 aaPredicted RBP19.41■□□□□ 0.7
COL7A1-208ENST00000470076 MLH1P40692 756 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 CLCN4P51793 760 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 DSC1Q08554 894 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 MTMR3Q13615 1198 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 UBALD2Q8IYN6 164 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 PLCD3Q8N3E9 789 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 TDRD5Q8NAT2 981 aaKnown RBP19.41■□□□□ 0.7
COL7A1-208ENST00000470076 KREMEN2Q8NCW0 462 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 POLR3FQ9H1D9 316 aaPredicted RBP19.41■□□□□ 0.7
COL7A1-208ENST00000470076 TMEM60Q9H2L4 133 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 RNF39Q9H2S5 420 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 TUFT1Q9NNX1 390 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 DBR1Q9UK59 544 aaKnown RBP19.41■□□□□ 0.7
COL7A1-208ENST00000470076 GIT1Q9Y2X7 761 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 PRG3Q9Y2Y8 225 aaPredicted RBP19.41■□□□□ 0.7
COL7A1-208ENST00000470076 HES2Q9Y543 173 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 KMT2EQ8IZD2 1858 aa19.41■□□□□ 0.7
COL7A1-208ENST00000470076 DENND4AQ7Z401 1863 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 SPDYE4A6NLX3 237 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 USO1O60763 962 aaKnown RBP19.4■□□□□ 0.7
COL7A1-208ENST00000470076 SPATA31C1P0DKV0 1188 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 MCM7P33993 719 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 OR1G1P47890 313 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 ST3GAL1Q11201 340 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 ORC2Q13416 577 aaPredicted RBP19.4■□□□□ 0.7
COL7A1-208ENST00000470076 KANK3Q6NY19 840 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 SLC27A1Q6PCB7 646 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 TMC5Q6UXY8 1006 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 GPR149Q86SP6 731 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 ZDHHC14Q8IZN3 488 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 MCPH1Q8NEM0 835 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 ZFP42Q96MM3 310 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 HERC2P3Q9BVR0 1158 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 MARCH5Q9NX47 278 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 LIMCH1Q9UPQ0 1083 aa19.4■□□□□ 0.7
COL7A1-208ENST00000470076 CACNA1HO95180 2353 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 A0A1B0GUA9 196 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 ATP2B1P20020 1258 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 MRE11P49959 708 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 SCNN1GP51170 649 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 PTPN5P54829 565 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 IER5LQ5T953 404 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 CATSPER3Q86XQ3 398 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 PRSS33Q8NF86 280 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 NACC1Q96RE7 527 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 RPS6KC1Q96S38 1066 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 LLPHQ9BRT6 129 aaKnown RBP19.39■□□□□ 0.69
COL7A1-208ENST00000470076 APOL6Q9BWW8 343 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 NXF3Q9H4D5 531 aaKnown RBP19.39■□□□□ 0.69
COL7A1-208ENST00000470076 ZMYM2Q9UBW7 1377 aa19.39■□□□□ 0.69
COL7A1-208ENST00000470076 A0A087WWV3 80 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 LRRIQ4A6NIV6 560 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 C2CD2LO14523 706 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 B4GALT5O43286 388 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 EFEMP2O95967 443 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 ADH1AP07327 375 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 GLUD2P49448 558 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 GUCY1B3Q02153 619 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 ELMSAN1Q6PJG2 1045 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 C15orf39Q6ZRI6 1047 aa19.38■□□□□ 0.69
COL7A1-208ENST00000470076 RNF168Q8IYW5 571 aaPredicted RBP19.38■□□□□ 0.69
COL7A1-208ENST00000470076 ERMNQ8TAM6 284 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms