RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 NOTUMQ6P988 496 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 TMC5Q6UXY8 1006 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 PPFIBP1Q86W92 1011 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 TDRD5Q8NAT2 981 aaKnown RBP23.44■■□□□ 1.34
COL9A3-207ENST00000467819 CNNM3Q8NE01 707 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 HSD17B14Q9BPX1 270 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 EMILIN2Q9BXX0 1053 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 ANKEF1Q9NU02 776 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 PRG3Q9Y2Y8 225 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-207ENST00000467819 HES2Q9Y543 173 aa23.44■■□□□ 1.34
COL9A3-207ENST00000467819 LYPLA2O95372 231 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 AXLP30530 894 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 MLH1P40692 756 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 OR1G1P47890 313 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 NCBP1Q09161 790 aaKnown RBP23.43■■□□□ 1.34
COL9A3-207ENST00000467819 KLHL5Q96PQ7 755 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 APOL6Q9BWW8 343 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 RNF39Q9H2S5 420 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 UBN1Q9NPG3 1134 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 STK39Q9UEW8 545 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 SORCS3Q9UPU3 1222 aa23.43■■□□□ 1.34
COL9A3-207ENST00000467819 A0A087WWV3 80 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 C2CD2LO14523 706 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 DGAT1O75907 488 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 PDGFBP01127 241 aaPredicted RBP23.42■■□□□ 1.34
COL9A3-207ENST00000467819 CNPP09543 421 aaKnown RBP23.42■■□□□ 1.34
COL9A3-207ENST00000467819 NEK4P51957 841 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 PTPN5P54829 565 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 MBTD1Q05BQ5 628 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 MTMR3Q13615 1198 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 PCBP1Q15365 356 aaKnown RBP eCLIP23.42■■□□□ 1.34
COL9A3-207ENST00000467819 PIGOQ8TEQ8 1089 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 CCDC51Q96ER9 411 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 GAD1Q99259 594 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 PHOX2BQ99453 314 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 CSRNP2Q9H175 543 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 SFXN1Q9H9B4 322 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 MRPL17Q9NRX2 175 aaKnown RBP23.42■■□□□ 1.34
COL9A3-207ENST00000467819 MARCH5Q9NX47 278 aa23.42■■□□□ 1.34
COL9A3-207ENST00000467819 ARL5CA6NH57 179 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 POTEMA6NI47 508 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 USO1O60763 962 aaKnown RBP23.41■■□□□ 1.34
COL9A3-207ENST00000467819 BRD1O95696 1058 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 URODP06132 367 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 ASGR2P07307 311 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 GLRA2P23416 452 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 RARRES1P49788 294 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 SCNN1GP51170 649 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 CLCN4P51793 760 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 AMHR2Q16671 573 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 IFNLR1Q8IU57 520 aaPredicted RBP23.41■■□□□ 1.34
COL9A3-207ENST00000467819 COLGALT2Q8IYK4 626 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 ZFP42Q96MM3 310 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 PRRX2Q99811 253 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 TRIM6Q9C030 488 aaPredicted RBP23.41■■□□□ 1.34
COL9A3-207ENST00000467819 POLR3FQ9H1D9 316 aaPredicted RBP23.41■■□□□ 1.34
COL9A3-207ENST00000467819 SMOC2Q9H3U7 446 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 PPP4R2Q9NY27 417 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 CACNA1HO95180 2353 aa23.41■■□□□ 1.34
COL9A3-207ENST00000467819 LILRB3O75022 631 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 SOD2P04179 222 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 ARF4P18085 180 aaPredicted RBP23.4■■□□□ 1.34
COL9A3-207ENST00000467819 ATP2B1P20020 1258 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 ARL2P36404 184 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 POU5F1BQ06416 359 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 TCF15Q12870 199 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 CDR2LQ86X02 465 aaPredicted RBP23.4■■□□□ 1.34
COL9A3-207ENST00000467819 UBALD2Q8IYN6 164 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 MTMR9Q96QG7 549 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 HERC2P3Q9BVR0 1158 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 NXF3Q9H4D5 531 aaKnown RBP23.4■■□□□ 1.34
COL9A3-207ENST00000467819 MIOSQ9NXC5 875 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 LIMD1Q9UGP4 676 aa23.4■■□□□ 1.34
COL9A3-207ENST00000467819 MTCL1Q9Y4B5 1905 aaKnown RBP23.39■■□□□ 1.34
COL9A3-207ENST00000467819 B4GALT5O43286 388 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 AVPR2P30518 371 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 GUCY1B3Q02153 619 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 MAEAQ7L5Y9 396 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 TAS1R1Q7RTX1 841 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 GPR149Q86SP6 731 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 ZDHHC14Q8IZN3 488 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 TMEM60Q9H2L4 133 aa23.39■■□□□ 1.33
COL9A3-207ENST00000467819 F8W810 466 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 INPPL1O15357 1258 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 MCM7P33993 719 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 DSC1Q08554 894 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 ST3GAL1Q11201 340 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 HACE1Q8IYU2 909 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 GPRC5CQ9NQ84 441 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 USTQ9Y2C2 406 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 GIT1Q9Y2X7 761 aa23.38■■□□□ 1.33
COL9A3-207ENST00000467819 LRRIQ4A6NIV6 560 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 NPTXRO95502 500 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 AKAP5P24588 427 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 CCDC149Q6ZUS6 474 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 PLCD3Q8N3E9 789 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 RPS6KC1Q96S38 1066 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 NFKBIZQ9BYH8 718 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 MAN1C1Q9NR34 630 aa23.37■■□□□ 1.33
COL9A3-207ENST00000467819 NR1I2O75469 434 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms