RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ATRXP46100 2492 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 TCHHQ07283 1943 aa13.27□□□□□ -0.28
SQSTM1-206ENST00000466342 EML1O00423 815 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 ZNF862O60290 1169 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 RPS6KA5O75582 802 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 DCNP07585 359 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 ZSCAN22P10073 491 aaPredicted RBP13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 FGFR1P11362 822 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 TMOD1P28289 359 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 ANP32AP39687 249 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 CRYBB1P53674 252 aaPredicted RBP13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 PKP1Q13835 747 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 NCAPH2Q6IBW4 605 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 PHLDB3Q6NSJ2 640 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 TMC5Q6UXY8 1006 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 CCDC149Q6ZUS6 474 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 GPR149Q86SP6 731 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 CASD1Q96PB1 797 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 RALYQ9UKM9 306 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 SIT1Q9Y3P8 196 aa13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 NOC2LQ9Y3T9 749 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-206ENST00000466342 POTEMA6NI47 508 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 GPR182O15218 404 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 BMP15O95972 392 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 F13A1P00488 732 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 OATP04181 439 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 EPCAMP16422 314 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 CA8P35219 290 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 PBX3P40426 434 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 PRPHP41219 470 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 FXR2P51116 673 aaKnown RBP eCLIP13.26□□□□□ -0.292e-7■■□□□ 13.5
SQSTM1-206ENST00000466342 ATP2C1P98194 919 aaPredicted RBP13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 LMNB2Q03252 620 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 EPHA7Q15375 998 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 UGCGQ16739 394 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 EFCAB12Q6NXP0 572 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 FAM173BQ6P4H8 233 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 TRMT1LQ7Z2T5 733 aaKnown RBP13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 METTL13Q8N6R0 699 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 TMEM87AQ8NBN3 555 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 TBC1D17Q9HA65 648 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 CDHR5Q9HBB8 845 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 CA14Q9ULX7 337 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 GINS2Q9Y248 185 aa13.26□□□□□ -0.29
SQSTM1-206ENST00000466342 PATJQ8NI35 1801 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 HOXA2O43364 376 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 GPR32O75388 356 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 PSMC5P62195 406 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 PRKCEQ02156 737 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 SF3A1Q15459 793 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 KIZQ2M2Z5 673 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 XKR3Q5GH77 459 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 FOXD4L5Q5VV16 416 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 CABP7Q86V35 215 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 LINC01465Q8N7H1 131 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 FEZF2Q8TBJ5 459 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 SLC22A17Q8WUG5 538 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 FOXD4L4Q8WXT5 416 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 SECISBP2LQ93073 1101 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 NIFKQ9BYG3 293 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 ST3GAL5Q9UNP4 418 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 IRAK3Q9Y616 596 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 DOCK8Q8NF50 2099 aa13.25□□□□□ -0.29
SQSTM1-206ENST00000466342 RALGAPA1Q6GYQ0 2036 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 SPTLC1O15269 473 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 DKC1O60832 514 aaKnown RBP eCLIP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 VTNP04004 478 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 P4HBP07237 508 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 QARSP47897 775 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 NLRP11P59045 1033 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 CDC42EP1Q00587 391 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 GIT2Q14161 759 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 TARBP2Q15633 366 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 ZNF528Q3MIS6 628 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 ARL6IP4Q66PJ3 421 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 DTHD1Q6ZMT9 781 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 MAML2Q8IZL2 1156 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 SLC39A11Q8N1S5 342 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 LRRC43Q8N309 656 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 SLC44A3Q8N4M1 653 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 TMEM40Q8WWA1 233 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 RSAD2Q8WXG1 361 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 MAP7D2Q96T17 732 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 EIF2AK1Q9BQI3 630 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 RAB34Q9BZG1 259 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 CLIC4Q9Y696 253 aa13.24□□□□□ -0.29
SQSTM1-206ENST00000466342 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 SRFP11831 508 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 CLCN3P51790 818 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 CYP4A11Q02928 519 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 PDIA5Q14554 519 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 PTPAQ15257 358 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 IL17AQ16552 155 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 POTEGQ6S5H5 508 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 C4orf19Q8IY42 314 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 ABI1Q8IZP0 508 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 IGSF22Q8N9C0 903 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 ERMNQ8TAM6 284 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 DYDC2Q96IM9 177 aa13.23□□□□□ -0.29
SQSTM1-206ENST00000466342 USP28Q96RU2 1077 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms