RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SNRNP35Q16560 246 aaKnown RBP12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ZNF720Q7Z2F6 126 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 CCDC89Q8N998 374 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 GMCL1P1Q8NEA9 526 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 PPP1R14CQ8TAE6 165 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 GRK7Q8WTQ7 553 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 C1orf54Q8WWF1 131 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 BAP1Q92560 729 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 KCNMB3Q9NPA1 279 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ALG6Q9Y672 507 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 RASGRF2O14827 1237 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 NEBLO76041 1014 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 NR3C2P08235 984 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 CCDC137Q6PK04 289 aaKnown RBP12.48□□□□□ -0.41
NPHP4-204ENST00000460696 OTOP1Q7RTM1 612 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ELMO3Q96BJ8 720 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 HAUS1Q96CS2 278 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ATP6V1G3Q96LB4 118 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 PI4K2AQ9BTU6 479 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 MKNK1Q9BUB5 465 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 ATP6V0A4Q9HBG4 840 aa12.48□□□□□ -0.41
NPHP4-204ENST00000460696 CCL15-CCL14A0A0B4J2E2 113 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 MYBL2P10244 700 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 PLS3P13797 630 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 SFNP31947 248 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 CA8P35219 290 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 KCNJ1P48048 391 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 IRAK1P51617 712 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 CCL15Q16663 113 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 SCYL2Q6P3W7 929 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 CASKIN2Q8WXE0 1202 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 ATG4CQ96DT6 458 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 NLRP4Q96MN2 994 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 RUNDC3BQ96NL0 473 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 SLITRK6Q9H5Y7 841 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 GPRC5DQ9NZD1 345 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 ANAPC5Q9UJX4 755 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 TRAF3IP3Q9Y228 551 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 ROBO3Q96MS0 1386 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 MAP2K7O14733 419 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 WDR46O15213 610 aaKnown RBP12.47□□□□□ -0.41
NPHP4-204ENST00000460696 TNNC2P02585 160 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 CCDC13Q8IYE1 715 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 M0R2N6 131 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 FANCGO15287 622 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 TMEM143Q96AN5 459 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 RNF25Q96BH1 459 aaPredicted RBP12.47□□□□□ -0.41
NPHP4-204ENST00000460696 POLR3FQ9H1D9 316 aaPredicted RBP12.47□□□□□ -0.41
NPHP4-204ENST00000460696 MLXIPLQ9NP71 852 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 AIPL1Q9NZN9 384 aa12.47□□□□□ -0.41
NPHP4-204ENST00000460696 A0A087WUV0 522 aaPredicted RBP12.46□□□□□ -0.41
NPHP4-204ENST00000460696 SLC26A4O43511 780 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 SNHG28P0DPA3 235 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 CBWD2Q8IUF1 395 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 CCDC63Q8NA47 563 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 AGBL3Q8NEM8 1001 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 MKL1Q969V6 931 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 BAIAP2L1Q9UHR4 511 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 LRRD1A4D1F6 860 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 TISP43B9A030 160 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 ATP2A2P16615 1042 aaKnown RBP12.46□□□□□ -0.41
NPHP4-204ENST00000460696 SETDB1Q15047 1291 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 C2CD6Q53TS8 623 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 ARSHQ5FYA8 562 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 FAM160B1Q5W0V3 765 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 EFCAB13Q8IY85 973 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 RSAD2Q8WXG1 361 aa12.46□□□□□ -0.41
NPHP4-204ENST00000460696 MRPL47Q9HD33 250 aaKnown RBP12.46□□□□□ -0.41
NPHP4-204ENST00000460696 PODXLO00592 558 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 CLDN3O15551 220 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 TMEM253P0C7T8 217 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 ITGA4P13612 1032 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 SEC24CP53992 1094 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 TKFCQ3LXA3 575 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 MEI1Q5TIA1 1274 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 HHATQ5VTY9 493 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 DNAJC24Q6P3W2 148 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 VSIG1Q86XK7 387 aa12.46□□□□□ -0.42
NPHP4-204ENST00000460696 POP1Q99575 1024 aaKnown RBP12.46□□□□□ -0.42
NPHP4-204ENST00000460696 SGK1O00141 431 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 STAM2O75886 525 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 COMTP21964 271 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 GBP1P32455 592 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 STXBP2Q15833 593 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 SRLQ86TD4 932 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 LRRC15Q8TF66 581 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 CPA5Q8WXQ8 436 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 LPAR1Q92633 364 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 DNAI2Q9GZS0 605 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 OLFML3Q9NRN5 406 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 PSD3Q9NYI0 1048 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 KCND2Q9NZV8 630 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 F8VZ95 297 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 RTN2O75298 545 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 KRT1P04264 644 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 SCP2P22307 547 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 PMS2P54278 862 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 SOX10P56693 466 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 Q3C1V9 767 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 CCDC38Q502W7 563 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms