RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 CDCA3Q99618 268 aaPredicted RBP25.38■■□□□ 1.65
PTPN4-208ENST00000460289 GBP3Q9H0R5 595 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 RNF39Q9H2S5 420 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 ENTPD7Q9NQZ7 604 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 FOXD4L1Q9NU39 408 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 KCNG1Q9UIX4 513 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 FAM50BQ9Y247 325 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 GIT1Q9Y2X7 761 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 PLXNA4Q9HCM2 1894 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 TTC28Q96AY4 2481 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 N4BP3O15049 544 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 HIP1RO75146 1068 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 NPTXRO95502 500 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 POMCP01189 267 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 ALDH2P05091 517 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 PRKCBP05771 671 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 ZNF280BQ86YH2 543 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 SYT2Q8N9I0 419 aaPredicted RBP25.37■■□□□ 1.65
PTPN4-208ENST00000460289 CALML4Q96GE6 196 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 TMEM175Q9BSA9 504 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 CCDC113Q9H0I3 377 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 C17orf75Q9HAS0 396 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 KCND2Q9NZV8 630 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 HES2Q9Y543 173 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 PCDHGC5Q9Y5F6 944 aa25.37■■□□□ 1.65
PTPN4-208ENST00000460289 ARL5CA6NH57 179 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 CCDC169A6NNP5 214 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 INPPL1O15357 1258 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 SSBP05455 408 aaKnown RBP eCLIP25.36■■□□□ 1.65
PTPN4-208ENST00000460289 LIG1P18858 919 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 GUCY2CP25092 1073 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 AFF1P51825 1210 aaKnown RBP25.36■■□□□ 1.65
PTPN4-208ENST00000460289 CDR2LQ86X02 465 aaPredicted RBP25.36■■□□□ 1.65
PTPN4-208ENST00000460289 HSCBQ8IWL3 235 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 IGSF21Q96ID5 467 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 PLIN2Q99541 437 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 ADPGKQ9BRR6 497 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 RUSC1Q9BVN2 902 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 APOL6Q9BWW8 343 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 NXF3Q9H4D5 531 aaKnown RBP25.36■■□□□ 1.65
PTPN4-208ENST00000460289 ZSCAN16Q9H4T2 348 aaPredicted RBP25.36■■□□□ 1.65
PTPN4-208ENST00000460289 DNAJB4Q9UDY4 337 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 STK39Q9UEW8 545 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 PHLPP2Q6ZVD8 1323 aa25.36■■□□□ 1.65
PTPN4-208ENST00000460289 GRXCR2A6NFK2 248 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 K7ERI5 159 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 STX6O43752 255 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 DDHD2O94830 711 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 NDUFV1P49821 464 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 PEX3P56589 373 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 RESTQ13127 1097 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 DMP1Q13316 513 aaPredicted RBP25.35■■□□□ 1.65
PTPN4-208ENST00000460289 SMC1AQ14683 1233 aaKnown RBP25.35■■□□□ 1.65
PTPN4-208ENST00000460289 TMEM119Q4V9L6 283 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 PLPP4Q5VZY2 271 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 DDX53Q86TM3 631 aaKnown RBP25.35■■□□□ 1.65
PTPN4-208ENST00000460289 GAD1Q99259 594 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 MTMR6Q9Y217 621 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 FAN1Q9Y2M0 1017 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 RBM19Q9Y4C8 960 aaKnown RBP25.35■■□□□ 1.65
PTPN4-208ENST00000460289 CLIC4Q9Y696 253 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 ATG2AQ2TAZ0 1938 aa25.35■■□□□ 1.65
PTPN4-208ENST00000460289 TCF20Q9UGU0 1960 aaKnown RBP25.35■■□□□ 1.65
PTPN4-208ENST00000460289 PER2O15055 1255 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 LINC01565O15544 149 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 PLA2G4BP0C869 781 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 MLH1P40692 756 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 NPTX2P47972 431 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 SLC11A1P49279 550 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 DUSP6Q16828 381 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 DAW1Q8N136 415 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 KIFC3Q9BVG8 833 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 PDZD7Q9H5P4 517 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 PARP2Q9UGN5 583 aa25.34■■□□□ 1.65
PTPN4-208ENST00000460289 ZMYM2Q9UBW7 1377 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 PDIA4P13667 645 aaKnown RBP25.33■■□□□ 1.65
PTPN4-208ENST00000460289 AKAP5P24588 427 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 SLC12A3P55017 1021 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 DLX2Q07687 328 aaPredicted RBP25.33■■□□□ 1.65
PTPN4-208ENST00000460289 APBB1IPQ7Z5R6 666 aaPredicted RBP25.33■■□□□ 1.65
PTPN4-208ENST00000460289 VPS52Q8N1B4 723 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 MRPL43Q8N983 215 aaKnown RBP25.33■■□□□ 1.65
PTPN4-208ENST00000460289 RASSF8Q8NHQ8 419 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 ZFP42Q96MM3 310 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 NECAB3Q96P71 396 aaPredicted RBP25.33■■□□□ 1.65
PTPN4-208ENST00000460289 TMEM134Q9H6X4 195 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 KMT5AQ9NQR1 393 aa25.33■■□□□ 1.65
PTPN4-208ENST00000460289 TTLL13PA6NNM8 815 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 HIDE1A8MVS5 230 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 TBX10O75333 385 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 NR1I2O75469 434 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 HSP90AA1P07900 732 aaKnown RBP25.32■■□□□ 1.64
PTPN4-208ENST00000460289 SCNN1GP51170 649 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 GIT2Q14161 759 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 PTPAQ15257 358 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 TMEM173Q86WV6 379 aaPredicted RBP25.32■■□□□ 1.64
PTPN4-208ENST00000460289 NTPCRQ9BSD7 190 aaKnown RBP25.32■■□□□ 1.64
PTPN4-208ENST00000460289 CD207Q9UJ71 328 aa25.32■■□□□ 1.64
PTPN4-208ENST00000460289 NRP1O14786 923 aa25.31■■□□□ 1.64
PTPN4-208ENST00000460289 B4GALT3O60512 393 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms