RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 PRKG2Q13237 762 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 TNIP1Q15025 636 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 PKN2Q16513 984 aaKnown RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 RABL6Q3YEC7 729 aaPredicted RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 ANKRD39Q53RE8 183 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 FBXW10Q5XX13 1052 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 GALNT17Q6IS24 598 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 PLBD1Q6P4A8 553 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 GGT6Q6P531 493 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 C1orf122Q6ZSJ8 110 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 RUFY3Q7L099 469 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 LRP10Q7Z4F1 713 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 FRMD5Q7Z6J6 570 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 DRAXINQ8NBI3 349 aaPredicted RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 MSANTD4Q8NCY6 345 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 RASSF8Q8NHQ8 419 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 BICD2Q8TD16 824 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 HDAC7Q8WUI4 952 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 NAF1Q96HR8 494 aaKnown RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 ZMAT2Q96NC0 199 aaKnown RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 STRBPQ96SI9 672 aaKnown RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 EIF2AK1Q9BQI3 630 aaKnown RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 FAM126AQ9BYI3 521 aaPredicted RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 TRIM7Q9C029 511 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 SLC7A5P2Q9GIP4 190 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 FANCFQ9NPI8 374 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 PLCB1Q9NQ66 1216 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 RASSF1Q9NS23 344 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 HERC5Q9UII4 1024 aaKnown RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 SUFUQ9UMX1 484 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 LUC7L2Q9Y383 392 aaKnown RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 NPHP4O75161 1426 aaPredicted RBP6.05□□□□□ -1.44
VPS41-209ENST00000457055 KDM5CP41229 1560 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 REREQ9P2R6 1566 aa6.05□□□□□ -1.44
VPS41-209ENST00000457055 IQGAP1P46940 1657 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 RASA4BC9J798 803 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 CASQ2O14958 399 aaPredicted RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 SPTLC2O15270 562 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 RASA4O43374 803 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 KCNQ2O43526 872 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 NEMFO60524 1076 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 PLOD3O60568 738 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 CD3EP07766 207 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 SFTPCP11686 197 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 BTF3P20290 206 aaKnown RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 CD247P20963 164 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 FBLN1P23142 703 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 SERPINB3P29508 390 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 USP8P40818 1118 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 RAD52P43351 418 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 GJA8P48165 433 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 KCNC1P48547 511 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 PDE6CP51160 858 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 IRX1P78414 480 aaPredicted RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 CAP1Q01518 475 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 AKAP17AQ02040 695 aaKnown RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 LRRC74AQ0VAA2 488 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 ACAP1Q15027 740 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 ZYXQ15942 572 aaKnown RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 CCDC178Q5BJE1 867 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 WWC2Q6AWC2 1192 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 C1orf228Q6PIY5 440 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 MILR1Q7Z6M3 343 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 SPATS2Q86XZ4 545 aaKnown RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 RBM12BQ8IXT5 1001 aaKnown RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 TCEAL8Q8IYN2 117 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 CEP57L1Q8IYX8 460 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 LILRB2Q8N423 598 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS41-209ENST00000457055 SUN5Q8TC36 379 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 CHAC2Q8WUX2 184 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 CFAP36Q96G28 342 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 PTCHD1Q96NR3 888 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 LRRCC1Q9C099 1032 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 NOL6Q9H6R4 1146 aaKnown RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 ETAA1Q9NY74 926 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 ARHGAP28Q9P2N2 729 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 PLA2G2DQ9UNK4 145 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 SF3B6Q9Y3B4 125 aaKnown RBP6.04□□□□□ -1.44
VPS41-209ENST00000457055 KIF3AQ9Y496 699 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 SLC30A1Q9Y6M5 507 aa6.04□□□□□ -1.44
VPS41-209ENST00000457055 ZNF518AQ6AHZ1 1483 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 CDC42BPBQ9Y5S2 1711 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 RGS12O14924 1447 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 SYNJ2BP-COX16A0A087WUM0 186 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 F8W031 263 aaPredicted RBP6.03□□□□□ -1.44
VPS41-209ENST00000457055 H0YC42 278 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 RTCAO00442 366 aaKnown RBP6.03□□□□□ -1.44
VPS41-209ENST00000457055 ELL2O00472 640 aaPredicted RBP6.03□□□□□ -1.44
VPS41-209ENST00000457055 TBC1D8O95759 1140 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 ITGA4P13612 1032 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 IFNGR1P15260 489 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 RPS2P15880 293 aaKnown RBP6.03□□□□□ -1.44
VPS41-209ENST00000457055 NEK2P51955 445 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 SLURP1P55000 103 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 CORO7P57737 925 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 KRTAP10-2P60368 255 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 CNGA3Q16281 694 aa6.03□□□□□ -1.44
VPS41-209ENST00000457055 PDCD2Q16342 344 aaPredicted RBP6.03□□□□□ -1.44
VPS41-209ENST00000457055 TNNI3KQ59H18 835 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms