RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 SPIRE2Q8WWL2 714 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 CLP1Q92989 425 aaKnown RBP20.54■□□□□ 0.88
SHH-203ENST00000435425 RNF39Q9H2S5 420 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 PDZD7Q9H5P4 517 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 TMEM134Q9H6X4 195 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 GDPD2Q9HCC8 539 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 ARHGAP28Q9P2N2 729 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 KCNG1Q9UIX4 513 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 RWDD3Q9Y3V2 267 aa20.54■□□□□ 0.88
SHH-203ENST00000435425 GTPBP6O43824 516 aaPredicted RBP20.53■□□□□ 0.88
SHH-203ENST00000435425 LPXNO60711 386 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 OFD1O75665 1012 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 CSPG5O95196 566 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 ATF7IP2Q5U623 682 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 RESP18Q5W5W9 173 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 EEF1DP3Q658K8 133 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 TAS1R3Q7RTX0 852 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 DDX12PQ92771 950 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 ADPGKQ9BRR6 497 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 NTPCRQ9BSD7 190 aaKnown RBP20.53■□□□□ 0.88
SHH-203ENST00000435425 NXF3Q9H4D5 531 aaKnown RBP20.53■□□□□ 0.88
SHH-203ENST00000435425 CWH43Q9H720 699 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 RSAD1Q9HA92 442 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 PARVGQ9HBI0 331 aa20.53■□□□□ 0.88
SHH-203ENST00000435425 H3BNC9 293 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 POLR2DO15514 142 aaKnown RBP20.52■□□□□ 0.88
SHH-203ENST00000435425 AKAP5P24588 427 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 STRN3Q13033 797 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 NOMO2Q5JPE7 1267 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 HACE1Q8IYU2 909 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 LRRC43Q8N309 656 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 TMEM161BQ8NDZ6 487 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 MAFAQ8NHW3 353 aaPredicted RBP20.52■□□□□ 0.88
SHH-203ENST00000435425 TARS2Q9BW92 718 aaKnown RBP20.52■□□□□ 0.88
SHH-203ENST00000435425 MRPL4Q9BYD3 311 aaKnown RBP20.52■□□□□ 0.88
SHH-203ENST00000435425 SCAND2PQ9GZW5 306 aaPredicted RBP20.52■□□□□ 0.88
SHH-203ENST00000435425 AAASQ9NRG9 546 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 PARP2Q9UGN5 583 aa20.52■□□□□ 0.88
SHH-203ENST00000435425 PLXNA4Q9HCM2 1894 aa20.52■□□□□ 0.87
SHH-203ENST00000435425 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.51■□□□□ 0.87
SHH-203ENST00000435425 K7ENM7 598 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 TRAK2O60296 914 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 RB1P06400 928 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 IDEP14735 1019 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 NCKAP1LP55160 1127 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 RNASELQ05823 741 aaKnown RBP20.51■□□□□ 0.87
SHH-203ENST00000435425 E2F4Q16254 413 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 HAUS6Q7Z4H7 955 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 IQUBQ8NA54 791 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 KLHL23Q8NBE8 558 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 COLGALT1Q8NBJ5 622 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 URGCPQ8TCY9 931 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 C11orf84Q9BUA3 381 aaPredicted RBP20.51■□□□□ 0.87
SHH-203ENST00000435425 MRPL9Q9BYD2 267 aaKnown RBP20.51■□□□□ 0.87
SHH-203ENST00000435425 GBP3Q9H0R5 595 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 ALG13Q9NP73 1137 aaKnown RBP20.51■□□□□ 0.87
SHH-203ENST00000435425 KLK14Q9P0G3 267 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 PCDHB12Q9Y5F1 795 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 MTCH2Q9Y6C9 303 aa20.51■□□□□ 0.87
SHH-203ENST00000435425 TDRD15B5MCY1 1934 aaKnown RBP20.51■□□□□ 0.87
SHH-203ENST00000435425 C5orf67F2Z3F1 127 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 POMCP01189 267 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 MAPTP10636 758 aaKnown RBP20.5■□□□□ 0.87
SHH-203ENST00000435425 LAG3P18627 525 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 NMT1P30419 496 aaKnown RBP20.5■□□□□ 0.87
SHH-203ENST00000435425 PBX3P40426 434 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 AFF1P51825 1210 aaKnown RBP20.5■□□□□ 0.87
SHH-203ENST00000435425 ZNF131P52739 623 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 ADALQ6DHV7 355 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 ZBTB33Q86T24 672 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 SFR1Q86XK3 245 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 FAM178BQ8IXR5 827 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 GAD1Q99259 594 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 ACO2Q99798 780 aaKnown RBP20.5■□□□□ 0.87
SHH-203ENST00000435425 TCHPQ9BT92 498 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 PLVAPQ9BX97 442 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 UBN1Q9NPG3 1134 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 TBC1D13Q9NVG8 400 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 TBC1D7Q9P0N9 293 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 KCNH3Q9ULD8 1083 aa20.5■□□□□ 0.87
SHH-203ENST00000435425 A0A1B0GVL5 298 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 H0YCG3 227 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 GRM6O15303 877 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 HARSP12081 509 aaKnown RBP20.49■□□□□ 0.87
SHH-203ENST00000435425 MLH1P40692 756 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 THNSL1Q8IYQ7 743 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 DNAJC19Q96DA6 116 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 BICD1Q96G01 975 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 CUEDC2Q9H467 287 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 SNTG2Q9NY99 539 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 TNFSF13BQ9Y275 285 aa20.49■□□□□ 0.87
SHH-203ENST00000435425 CHD7Q9P2D1 2997 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 ZC3H11AO75152 810 aaKnown RBP eCLIP20.48■□□□□ 0.87
SHH-203ENST00000435425 ITGB1P05556 798 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 CMA1P23946 247 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 MATR3P43243 847 aaKnown RBP eCLIP20.48■□□□□ 0.87
SHH-203ENST00000435425 DCAF4L1Q3SXM0 396 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 ZNF568Q3ZCX4 644 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 KCNT2Q6UVM3 1135 aa20.48■□□□□ 0.87
SHH-203ENST00000435425 P2RX5Q93086 422 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms