RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 PURAQ00577 322 aaKnown RBP12.35□□□□□ -0.43
LINC00539-203ENST00000434601 DRP2Q13474 957 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 MFSD10Q14728 455 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 GRIK4Q16099 956 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 MAP4K3Q8IVH8 894 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 DRC7Q8IY82 874 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 LRRC71Q8N4P6 559 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 RETREG2Q8NC44 543 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 PSPC1Q8WXF1 523 aaKnown RBP12.35□□□□□ -0.43
LINC00539-203ENST00000434601 PPM1EQ8WY54 764 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 EEF2KMTQ96G04 330 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 NAP1L5Q96NT1 182 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-203ENST00000434601 MTG1Q9BT17 334 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-203ENST00000434601 KATNAL1Q9BW62 490 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 WNT8AQ9H1J5 351 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 AGPAT3Q9NRZ7 376 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 INTS13Q9NVM9 706 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 TAB2Q9NYJ8 693 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 CGNQ9P2M7 1197 aaKnown RBP12.35□□□□□ -0.43
LINC00539-203ENST00000434601 TBX20Q9UMR3 447 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 EXOC7Q9UPT5 735 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 PCDHA11Q9Y5I1 949 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 UMODL1Q5DID0 1318 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 MUC3AQ02505 3323 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 LRRIQ4A6NIV6 560 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 ZBBXA8MT70 800 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 CETN3O15182 167 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 PTMAP06454 111 aaKnown RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 TPM2P07951 284 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 RPL13P26373 211 aaKnown RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 MTIF2P46199 727 aaKnown RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 PSEN2P49810 448 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 SNRPFP62306 86 aaKnown RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 MRPS5P82675 430 aaKnown RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 PTPN11Q06124 597 aaPredicted RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 MKRN4PQ13434 485 aaPredicted RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 CAPSQ13938 189 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 MXD4Q14582 209 aaPredicted RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 KIAA0753Q2KHM9 967 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 CCDC40Q4G0X9 1142 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 NFRKBQ6P4R8 1299 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 FILIP1Q7Z7B0 1213 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 CREBRFQ8IUR6 639 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 LINC01465Q8N7H1 131 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 SPC24Q8NBT2 197 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 DEPTORQ8TB45 409 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 KAT2BQ92831 832 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 IKZF4Q9H2S9 585 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 NKX2-4Q9H2Z4 354 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 SUGCTQ9HAC7 445 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 SUCLA2Q9P2R7 463 aaPredicted RBP12.34□□□□□ -0.43
LINC00539-203ENST00000434601 PHLPP2Q6ZVD8 1323 aa12.34□□□□□ -0.43
LINC00539-203ENST00000434601 REV3LO60673 3130 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 RRN3P2A6NIE6 340 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 LRRC10BA6NIK2 292 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 LGALS16A8MUM7 142 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 GOLGA6L6A8MZA4 724 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 HAS3O00219 553 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 PITPNM1O00562 1244 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 N4BP3O15049 544 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 CLIC2O15247 247 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 SLC16A3O15427 465 aaKnown RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 SMIM10L2AP0DMW4 78 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 SMIM10L2BP0DMW5 78 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 EPB41P11171 864 aaKnown RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 PRKCSHP14314 528 aaPredicted RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 ATP2A2P16615 1042 aaKnown RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 DNM2P50570 870 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 CLCN3P51790 818 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 MARSP56192 900 aaKnown RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 ADAM9Q13443 819 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 NR1I3Q14994 352 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 MAN2A1Q16706 1144 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 FAM47CQ5HY64 1035 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 PPP2R2DQ66LE6 453 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 CDCA2Q69YH5 1023 aaPredicted RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 EFCAB12Q6NXP0 572 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 MTHFD1LQ6UB35 978 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 C12orf56Q8IXR9 622 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 METTL13Q8N6R0 699 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 PRPF31Q8WWY3 499 aaKnown RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 SCLYQ96I15 445 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 ASB2Q96Q27 587 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 TUBGCP2Q9BSJ2 902 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 VPS16Q9H269 839 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 RTN4Q9NQC3 1192 aaKnown RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 TRMT13Q9NUP7 481 aaKnown RBP12.33□□□□□ -0.44
LINC00539-203ENST00000434601 TANC1Q9C0D5 1861 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 NRCAMQ92823 1304 aa12.33□□□□□ -0.44
LINC00539-203ENST00000434601 PRRC2BQ5JSZ5 2229 aaKnown RBP12.32□□□□□ -0.44
LINC00539-203ENST00000434601 KLRC1P26715 233 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 TMOD1P28289 359 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 LAMTOR4Q0VGL1 99 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 STRN3Q13033 797 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 BFSP2Q13515 415 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 TFDP1Q14186 410 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 ADGRE1Q14246 886 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 MYBPC2Q14324 1141 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 NBPF20Q3BBV1 942 aa12.32□□□□□ -0.44
LINC00539-203ENST00000434601 CEP135Q66GS9 1140 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms