RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PCDHA13Q9Y5I0 950 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 RSPH10B2B2RC85 870 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 RSPH10BP0C881 870 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 RARBP10826 455 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PDAP1Q13442 181 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 MFSD4BQ5TF39 518 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 XXYLT1Q8NBI6 393 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 DDX17Q92841 729 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 KIF12Q96FN5 646 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PARK7Q99497 189 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 POLR3EQ9NVU0 708 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 HDAC6Q9UBN7 1215 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 DTNAQ9Y4J8 743 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 UGGT1Q9NYU2 1555 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 FOXP2O15409 715 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 FAM107AO95990 144 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PLCG1P19174 1290 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PHKA1P46020 1223 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CRKP46108 304 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 EFNA5P52803 228 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 DHX9Q08211 1270 aaKnown RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 FAM180AQ6UWF9 173 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CLEC4GQ6UXB4 293 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ICA1LQ8NDH6 482 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 BTBD6Q96KE9 485 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PIGSQ96S52 555 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 TESK2Q96S53 571 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 TIPINQ9BVW5 301 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CCDC90BQ9GZT6 254 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ACAD9Q9H845 621 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PLEKHG1Q9ULL1 1385 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 A0A1W2PQ27 194 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 A0A1W2PQ64 194 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 A0A1W2PQD8 194 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 MMP1P03956 469 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 MMP10P09238 476 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 MLNP12872 115 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 GNA15P30679 374 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 HOXA13P31271 388 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 RASGRF1Q13972 1273 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 MTFR1Q15390 333 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ENAHQ8N8S7 591 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CEP95Q96GE4 821 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PARVAQ9NVD7 372 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 BFARQ9NZS9 450 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 DPP7Q9UHL4 492 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 SNTNA6NMZ2 147 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CCDC188H7C350 402 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PRPF3O43395 683 aaKnown RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ADD2P35612 726 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 GPC5P78333 572 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 DEPDC1Q5TB30 811 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ANKRD40Q6AI12 368 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 UGT3A1Q6NUS8 523 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 FBXO18Q8NFZ0 1043 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 SCUBE2Q9NQ36 999 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 RNF103-CHMP3A0A140T963 221 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 M0QYV0 167 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 C21orf2O43822 256 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 LRG1P02750 347 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 EIF2S1P05198 315 aaKnown RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 KCNA2P16389 499 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 HARS2P49590 506 aaKnown RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 SNAPC2Q13487 334 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 THNSL1Q8IYQ7 743 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ARHGAP18Q8N392 663 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CDC23Q9UJX2 597 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ZNF608Q9ULD9 1512 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ZBTB5O15062 677 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 NDUFB5O43674 189 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PRMT3O60678 531 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CD4P01730 458 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 ADRA2BP18089 450 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CPT1AP50416 773 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 TPI1P60174 286 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 TMEM270Q6UE05 265 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 FAM20AQ96MK3 541 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 A0A087WUV0 522 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 DIAPH2O60879 1101 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 NDUFS3O75489 264 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 GH2P01242 217 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 TFRCP02786 760 aaKnown RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 CHRNA3P32297 505 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 RGS2P41220 211 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 TRIP4Q15650 581 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 FASTKD1Q53R41 847 aaKnown RBP7.25□□□□□ -1.25
SCN1A-204ENST00000423058 RNF135Q8IUD6 432 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 DTX3LQ8TDB6 740 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 SAYSD1Q9NPB0 183 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PCDHA6Q9UN73 950 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 PCDHA8Q9Y5H6 950 aa7.25□□□□□ -1.25
SCN1A-204ENST00000423058 GGPS1O95749 300 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 NPEPPSP55786 919 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 HIST2H2ACQ16777 129 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 HIST2H2AA3Q6FI13 130 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 VPS37AQ8NEZ2 397 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 XPO6Q96QU8 1125 aaKnown RBP7.24□□□□□ -1.25
SCN1A-204ENST00000423058 PITPNM3Q9BZ71 974 aa7.24□□□□□ -1.25
SCN1A-204ENST00000423058 PRG3Q9Y2Y8 225 aaPredicted RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms