RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 PDZD7Q9H5P4 517 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 TMEM63CQ9P1W3 806 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 GDAQ9Y2T3 454 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 A0A1B0GUA9 196 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 N4BP3O15049 544 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 EFCAB14O75071 495 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 ZSCAN20P17040 1043 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-202ENST00000422991 HOXD13P35453 343 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 MORC3Q14149 939 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 TMEM132AQ24JP5 1023 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 LRIT3Q3SXY7 679 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 ZNF658Q5TYW1 1059 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-202ENST00000422991 TWF2Q6IBS0 349 aaKnown RBP18.64■□□□□ 0.57
COL7A1-202ENST00000422991 OTOP2Q7RTS6 562 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 RTN4RL1Q86UN2 441 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-202ENST00000422991 HERVK_113Q902F9 699 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 TRAIPQ9BWF2 469 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 GTPBP4Q9BZE4 634 aaKnown RBP18.64■□□□□ 0.57
COL7A1-202ENST00000422991 RGS18Q9NS28 235 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 TNFSF13BQ9Y275 285 aa18.64■□□□□ 0.57
COL7A1-202ENST00000422991 TTC3P53804 2025 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-202ENST00000422991 BIN1O00499 593 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 ABLIM1O14639 778 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 HNRNPDLO14979 420 aaKnown RBP18.63■□□□□ 0.57
COL7A1-202ENST00000422991 PROZP22891 400 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 WDR5P61964 334 aaKnown RBP18.63■□□□□ 0.57
COL7A1-202ENST00000422991 SKOR2Q2VWA4 1001 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-202ENST00000422991 UBXN11Q5T124 520 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 EEF1DP3Q658K8 133 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 CAVIN1Q6NZI2 390 aaKnown RBP18.63■□□□□ 0.57
COL7A1-202ENST00000422991 SLC39A4Q6P5W5 647 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 SLC27A1Q6PCB7 646 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 CDR2LQ86X02 465 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-202ENST00000422991 SMYD4Q8IYR2 804 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-202ENST00000422991 TRIML1Q8N9V2 468 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 IKZF4Q9H2S9 585 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 PTPRHQ9HD43 1115 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 C1orf112Q9NSG2 853 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 EXOC7Q9UPT5 735 aa18.63■□□□□ 0.57
COL7A1-202ENST00000422991 C9IYK1 514 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 SOX1O00570 391 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-202ENST00000422991 ENPP3O14638 875 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 TOM1L1O75674 476 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 BMP6P22004 513 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 LIG4P49917 911 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 COBLL1Q53SF7 1204 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 C9orf50Q5SZB4 431 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 RASIP1Q5U651 963 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 MPZL3Q6UWV2 235 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 NELFCDQ8IXH7 590 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 MYOCDQ8IZQ8 938 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 GUF1Q8N442 669 aaKnown RBP18.62■□□□□ 0.57
COL7A1-202ENST00000422991 SYAP1Q96A49 352 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-202ENST00000422991 EIF2AQ9BY44 585 aaKnown RBP18.62■□□□□ 0.57
COL7A1-202ENST00000422991 TMEM206Q9H813 350 aa18.62■□□□□ 0.57
COL7A1-202ENST00000422991 LAMA2P24043 3122 aaKnown RBP18.61■□□□□ 0.57
COL7A1-202ENST00000422991 TISP43B9A030 160 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 ANKRD63C9JTQ0 380 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 NPTXRO95502 500 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 RAB27AP51159 221 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 DCAF4L1Q3SXM0 396 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 ZNF568Q3ZCX4 644 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 ISM2Q6H9L7 571 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.61■□□□□ 0.57
COL7A1-202ENST00000422991 SLC24A5Q71RS6 500 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 SYCP3Q8IZU3 236 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 ZBTB45Q96K62 511 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-202ENST00000422991 ADPGKQ9BRR6 497 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 CDT1Q9H211 546 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 MTIF3Q9H2K0 278 aaKnown RBP18.61■□□□□ 0.57
COL7A1-202ENST00000422991 FAM105AQ9NUU6 356 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 CXXC1Q9P0U4 656 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-202ENST00000422991 ANKFY1Q9P2R3 1169 aa18.61■□□□□ 0.57
COL7A1-202ENST00000422991 A0A0U1RQF3 1178 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 ZBBXA8MT70 800 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 KIF20AO95235 890 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 KCNJ6P48051 423 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 FAM189BP81408 668 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 DEFB103AP81534 67 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 MCL1Q07820 350 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 NOLC1Q14978 699 aaKnown RBP eCLIP18.6■□□□□ 0.57
COL7A1-202ENST00000422991 SHHQ15465 462 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 KNOP1Q1ED39 458 aaKnown RBP18.6■□□□□ 0.57
COL7A1-202ENST00000422991 APBB1IPQ7Z5R6 666 aaPredicted RBP18.6■□□□□ 0.57
COL7A1-202ENST00000422991 ECHDC2Q86YB7 292 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 HAPLN2Q9GZV7 340 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 GBP3Q9H0R5 595 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 KCTD10Q9H3F6 313 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 MAPK8IP1Q9UQF2 711 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 PCDHB2Q9Y5E7 798 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 STYXL1Q9Y6J8 313 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 RALGAPA2Q2PPJ7 1873 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 COL4A6Q14031 1691 aa18.6■□□□□ 0.57
COL7A1-202ENST00000422991 TGFB1I1O43294 461 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 ZNF623O75123 536 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 AMHP03971 560 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 MCF2P10911 925 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 ATF7P17544 494 aaPredicted RBP18.59■□□□□ 0.57
COL7A1-202ENST00000422991 PRCPP42785 496 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms