RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ANKRD31Q8N7Z5 1873 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 F8W031 263 aaPredicted RBP7.82□□□□□ -1.16
USP40-202ENST00000409945 PNLIPP16233 465 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 EPHA5P54756 1037 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 PRR5P85299 388 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 CRY2Q49AN0 593 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 IQSEC1Q6DN90 963 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 EFHBQ8N7U6 833 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 TSPYL6Q8N831 410 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 AGBL5Q8NDL9 886 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 ZNF526Q8TF50 670 aaPredicted RBP7.82□□□□□ -1.16
USP40-202ENST00000409945 SLC5A5Q92911 643 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 SPO11Q9Y5K1 396 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 CACNA1FO60840 1977 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 BUB1BO60566 1050 aaPredicted RBP7.82□□□□□ -1.16
USP40-202ENST00000409945 BBOX1O75936 387 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 C4BPAP04003 597 aaKnown RBP7.82□□□□□ -1.16
USP40-202ENST00000409945 TERF2Q15554 542 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 CBLL1Q75N03 491 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 SUPT20HQ8NEM7 779 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 ISCA1Q9BUE6 129 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 TOMM22Q9NS69 142 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 RIC8BQ9NVN3 520 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 C14orf119Q9NWQ9 140 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 KLHL14Q9P2G3 628 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 MAP3K2Q9Y2U5 619 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 PCDHB4Q9Y5E5 795 aa7.82□□□□□ -1.16
USP40-202ENST00000409945 ABCC12Q96J65 1359 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 PI4KAP2A4QPH2 592 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 SRGAP3O43295 1099 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 ERVFRD-1P60508 538 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 FAM26EQ8N5C1 309 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 PI4KAP1Q8N8J0 262 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 ATP23Q9Y6H3 246 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 ARFGEF2Q9Y6D5 1785 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 ADCY9O60503 1353 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 CACNA1SQ13698 1873 aa7.81□□□□□ -1.16
USP40-202ENST00000409945 COL11A2P13942 1736 aaPredicted RBP7.8□□□□□ -1.16
USP40-202ENST00000409945 H7C1D1 291 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 KRIT1O00522 736 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 H2AFYO75367 372 aaKnown RBP7.8□□□□□ -1.16
USP40-202ENST00000409945 APPP05067 770 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 PCCAP05165 728 aaPredicted RBP7.8□□□□□ -1.16
USP40-202ENST00000409945 MMEP08473 750 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 CT47B1P0C2W7 299 aaPredicted RBP7.8□□□□□ -1.16
USP40-202ENST00000409945 CPEP16870 476 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 PLEKHN1Q494U1 663 aaPredicted RBP7.8□□□□□ -1.16
USP40-202ENST00000409945 CCDC152Q4G0S7 254 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 SYDE2Q5VT97 1194 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 NETO2Q8NC67 525 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 FAM89AQ96GI7 184 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 INTS4Q96HW7 963 aaKnown RBP7.8□□□□□ -1.16
USP40-202ENST00000409945 SMOC1Q9H4F8 434 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 FZD9O00144 591 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 TCERG1O14776 1098 aaKnown RBP7.8□□□□□ -1.16
USP40-202ENST00000409945 MT-CO1P00395 513 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 CYBBP04839 570 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 RAB27AP51159 221 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 ARHGAP44Q17R89 818 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 INAVAQ3KP66 663 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 PAQR3Q6TCH7 311 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 LILRA2Q8N149 483 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 DNAAF4Q8WXU2 420 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 KIRREL1Q96J84 757 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 PSMD1Q99460 953 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 VPS33BQ9H267 617 aa7.8□□□□□ -1.16
USP40-202ENST00000409945 CLASP2O75122 1294 aaKnown RBP7.79□□□□□ -1.16
USP40-202ENST00000409945 RAC2P15153 192 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 STAT5AP42229 794 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 GRAPQ13588 217 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 BTBD8Q5XKL5 378 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 CABP7Q86V35 215 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 DCP2Q8IU60 420 aaKnown RBP7.79□□□□□ -1.16
USP40-202ENST00000409945 GRAPLQ8TC17 118 aaPredicted RBP7.79□□□□□ -1.16
USP40-202ENST00000409945 TGFBRAP1Q8WUH2 860 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 SEC14L1Q92503 715 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 CDC5LQ99459 802 aaKnown RBP7.79□□□□□ -1.16
USP40-202ENST00000409945 PUS7LQ9H0K6 701 aaKnown RBP7.79□□□□□ -1.16
USP40-202ENST00000409945 ATP6V0A2Q9Y487 856 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 SLX4Q8IY92 1834 aa7.79□□□□□ -1.16
USP40-202ENST00000409945 SCO2A0A1W2PP80 73 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 GLTPD2A6NH11 291 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.78□□□□□ -1.16
USP40-202ENST00000409945 MC4RP32245 332 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 MC3RP41968 323 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 SCAND1P57086 179 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 RAB3GAP1Q15042 981 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 SF3B3Q15393 1217 aaKnown RBP7.78□□□□□ -1.16
USP40-202ENST00000409945 DPP8Q6V1X1 898 aaPredicted RBP7.78□□□□□ -1.16
USP40-202ENST00000409945 SP8Q8IXZ3 490 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 SYNE4Q8N205 404 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 LINS1Q8NG48 757 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 PRDM12Q9H4Q4 367 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 PCIF1Q9H4Z3 704 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 CDHR2Q9BYE9 1310 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 FER1L6Q2WGJ9 1857 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 SHTN1A0MZ66 631 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 VEGFAP15692 232 aaPredicted RBP7.78□□□□□ -1.16
USP40-202ENST00000409945 ARL4AP40617 200 aa7.78□□□□□ -1.16
USP40-202ENST00000409945 C1QTNF8P60827 252 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms