RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 DCAF12L1Q5VU92 463 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 KAZNQ674X7 775 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 TMEM130Q8N3G9 435 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 CCDC114Q96M63 670 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 PWWP2AQ96N64 755 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 PICK1Q9NRD5 415 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 NR3C2P08235 984 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 ANGEL2Q5VTE6 544 aaKnown RBP14.43□□□□□ -0.1
VPS54-203ENST00000409558 SCARA3Q6AZY7 606 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 DPY19L2P1Q6NXN4 242 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 PPP1R13LQ8WUF5 828 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 NUP85Q9BW27 656 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 CNOT7Q9UIV1 285 aaKnown RBP14.43□□□□□ -0.1
VPS54-203ENST00000409558 SLC16A3O15427 465 aaKnown RBP14.43□□□□□ -0.1
VPS54-203ENST00000409558 PLS3P13797 630 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 DR1Q01658 176 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 CCDC26Q8TAB7 109 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 PDCD2LQ9BRP1 358 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 TAOK3Q9H2K8 898 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 CLDN3O15551 220 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 JAM2P57087 298 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 MAGOHP61326 146 aaKnown RBP14.43□□□□□ -0.1
VPS54-203ENST00000409558 SETQ01105 290 aaPredicted RBP14.43□□□□□ -0.1
VPS54-203ENST00000409558 CNTN2Q02246 1040 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 ANO5Q75V66 913 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 HAUS1Q96CS2 278 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 FNBP1Q96RU3 617 aa14.43□□□□□ -0.1
VPS54-203ENST00000409558 AARSP49588 968 aaKnown RBP eCLIP14.42□□□□□ -0.11e-7■■■■■ 41.2
VPS54-203ENST00000409558 ZNF772Q68DY9 489 aaPredicted RBP14.42□□□□□ -0.1
VPS54-203ENST00000409558 RASSF4Q9H2L5 321 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 FEZ2Q9UHY8 353 aaPredicted RBP14.42□□□□□ -0.1
VPS54-203ENST00000409558 MYH11P35749 1972 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 DHX15O43143 795 aaKnown RBP14.42□□□□□ -0.1
VPS54-203ENST00000409558 PPP1R7Q15435 360 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 SCARA5Q6ZMJ2 495 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 GPR88Q9GZN0 384 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 DAAM1Q9Y4D1 1078 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 GOLGA8KD6RF30 607 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 INTS8Q75QN2 995 aaKnown RBP14.42□□□□□ -0.1
VPS54-203ENST00000409558 SYCE1Q8N0S2 351 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 FBXO25Q8TCJ0 367 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 KREMEN1Q96MU8 473 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 GDF3Q9NR23 364 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 GGT7Q9UJ14 662 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 GOLGA6L10A0A0M3HER8 536 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 EIF3DO15371 548 aaKnown RBP eCLIP14.42□□□□□ -0.1
VPS54-203ENST00000409558 ACSL3O95573 720 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 SHBGP04278 402 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 ADSSP30520 456 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 LIG4P49917 911 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 POTEAQ6S8J7 498 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 BORCS6Q96GS4 357 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 PBKQ96KB5 322 aa14.42□□□□□ -0.1
VPS54-203ENST00000409558 ZNF862O60290 1169 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 PYGMP11217 842 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 ORC1Q13415 861 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 ZBTB41Q5SVQ8 909 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 ANKRD35Q8N283 1001 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 TBK1Q9UHD2 729 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 ANAPC7Q9UJX3 599 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 SRGAP2CP0DJJ0 459 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 PSMC4P43686 418 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 MMP14P50281 582 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 POLGP54098 1239 aaPredicted RBP14.41□□□□□ -0.1
VPS54-203ENST00000409558 TRAF1Q13077 416 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 IFT88Q13099 833 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 MCF2L2Q86YR7 1114 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 C11orf70Q9BRQ4 267 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 MRIQ9BWK5 157 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 ASIC3Q9UHC3 531 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 ODF2LQ9ULJ1 636 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 WDR64B1ANS9 1081 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 PI4K2BG5E9Z4 385 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 PPFIA4O75335 1185 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 PPATQ06203 517 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 ZNF564Q8TBZ8 553 aaPredicted RBP14.41□□□□□ -0.1
VPS54-203ENST00000409558 ZNF526Q8TF50 670 aaPredicted RBP14.41□□□□□ -0.1
VPS54-203ENST00000409558 FMO2Q99518 471 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 PIM2Q9P1W9 311 aa14.41□□□□□ -0.1
VPS54-203ENST00000409558 CNOT8Q9UFF9 292 aaKnown RBP14.41□□□□□ -0.1
VPS54-203ENST00000409558 CFHP08603 1231 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 CCDC172P0C7W6 258 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 PSMC5P62195 406 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 MCTP2Q6DN12 878 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 CCDC60Q8IWA6 550 aaPredicted RBP14.4□□□□□ -0.1
VPS54-203ENST00000409558 PIK3R5Q8WYR1 880 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 RIT2Q99578 217 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 O00370 1275 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 PTGER2P43116 358 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 PDE6CP51160 858 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 UAP1Q16222 522 aaPredicted RBP14.4□□□□□ -0.1
VPS54-203ENST00000409558 BMT2Q1RMZ1 405 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 SV2AQ7L0J3 742 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 GMLQ99445 158 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 TMEM206Q9H813 350 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 PXMP2Q9NR77 195 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 TBX20Q9UMR3 447 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 GINS2Q9Y248 185 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 ADGRA3Q8IWK6 1321 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 TTLL12Q14166 644 aaPredicted RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms