RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 FAM86B2P0C5J1 330 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 SUPT20HL2P0C7V6 817 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 TXNP10599 105 aaKnown RBP14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 SMPD1P17405 629 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 ARHGAP25P42331 645 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 VAV2P52735 878 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 GABPB1Q06547 395 aaPredicted RBP14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 GPS2Q13227 327 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 MTMR1Q13613 665 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 NAA30Q147X3 362 aaPredicted RBP14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 ZCWPW2Q504Y3 356 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 FAM47CQ5HY64 1035 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 TEX35Q5T0J7 233 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 KCNV1Q6PIU1 500 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 WDR59Q6PJI9 974 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 CATSPER3Q86XQ3 398 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 HERC6Q8IVU3 1022 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 GJD3Q8N144 294 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 TRIM58Q8NG06 486 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 GPRASP2Q96D09 838 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 VWCEQ96DN2 955 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 CDHR1Q96JP9 859 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 ALS2CR12Q96Q35 445 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 SLC9A7Q96T83 725 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 SEZ6LQ9BYH1 1024 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 ARFGAP3Q9NP61 516 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 MTUS1Q9ULD2 1270 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 GUCA1BQ9UMX6 200 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 GNEQ9Y223 722 aaKnown RBP14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 TRAF3IP3Q9Y228 551 aa14.08□□□□□ -0.16
SMARCB1-203ENST00000407082 XIRP2A4UGR9 3374 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 CCDC151A5D8V7 595 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 SPATA31C2B4DYI2 1134 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 RNF225M0QZC1 329 aaPredicted RBP14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 EIF3DO15371 548 aaKnown RBP eCLIP14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 MSH4O15457 936 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 MAFGO15525 162 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 AKR1B10O60218 316 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 LCA5LO95447 670 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 TGFB3P10600 412 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 ICAM3P32942 547 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 NKX3-2P78367 333 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 SPIRE1Q08AE8 756 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 PPP2R5CQ13362 524 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 MAPK8IP2Q13387 824 aaPredicted RBP14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 ADAM9Q13443 819 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 ECM1Q16610 540 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 LY6KQ17RY6 165 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 KNOP1Q1ED39 458 aaKnown RBP14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 C10orf76Q5T2E6 689 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 TMEM63BQ5T3F8 832 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 NIPA1Q7RTP0 329 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 SPRED2Q7Z698 418 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 CCDC155Q8N6L0 562 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 PPP1R13LQ8WUF5 828 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 NACC1Q96RE7 527 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 EIF2AK1Q9BQI3 630 aaKnown RBP14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 ZBED2Q9BTP6 218 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 KCNH7Q9NS40 1196 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 AGPAT5Q9NUQ2 364 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 PCDHA2Q9Y5H9 948 aa14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 BZW2Q9Y6E2 419 aaKnown RBP14.07□□□□□ -0.16
SMARCB1-203ENST00000407082 IGLV3-22A0A075B6J6 115 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 SLC16A3O15427 465 aaKnown RBP14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 ARIH2O95376 493 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 MYL3P08590 195 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 ARP10275 920 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 ANXA13P27216 316 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 CLCN6P51797 869 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 CBX1P83916 185 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 GIT2Q14161 759 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 EPHA7Q15375 998 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 NFIL3Q16649 462 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 BMT2Q1RMZ1 405 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 DUSP28Q4G0W2 176 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 SFMBT2Q5VUG0 894 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 LRCH2Q5VUJ6 765 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 PDXDC1Q6P996 788 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 CCDC62Q6P9F0 684 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 TRIM59Q8IWR1 403 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 RNF10Q8N5U6 811 aaKnown RBP14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 GOLGA5Q8TBA6 731 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 PHOSPHO2Q8TCD6 241 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 GDPD5Q8WTR4 605 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 HNRNPLLQ8WVV9 542 aaKnown RBP14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 SLC5A5Q92911 643 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 SECISBP2LQ93073 1101 aaKnown RBP14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 SNX27Q96L92 541 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 TEKT3Q9BXF9 490 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 KCTD10Q9H3F6 313 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 ACBD3Q9H3P7 528 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 ZHX3Q9H4I2 956 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 OLFML3Q9NRN5 406 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 TYW1Q9NV66 732 aaKnown RBP14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 SAR1BQ9Y6B6 198 aa14.06□□□□□ -0.16
SMARCB1-203ENST00000407082 KIAA1217Q5T5P2 1943 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 NKRFO15226 690 aaKnown RBP eCLIP14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 GAS7O60861 476 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 FAM13AO94988 1023 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 SERPING1P05155 500 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms