RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 SCN4AP35499 1836 aa7.07□□□□□ -1.28
TM9SF4-202ENST00000398022 B4E1Z4 1266 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 AP3B1O00203 1094 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PLOD3O60568 738 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 A1BGP04217 495 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 C6orf222P0C671 652 aaPredicted RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 VARSP26640 1264 aaKnown RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 SERPINB3P29508 390 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 MLH1P40692 756 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 LMAN1P49257 510 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 MSLNQ13421 630 aaPredicted RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PTPAQ15257 358 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 ASIC2Q16515 512 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 TATDN1Q6P1N9 297 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 TRIM65Q6PJ69 517 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 REXO1L1PQ8IX06 675 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 CEP112Q8N8E3 955 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 TOR1AIP2Q8NFQ8 470 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 LMBR1Q8WVP7 490 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 DPF2Q92785 391 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PHKBQ93100 1093 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 CLIC6Q96NY7 704 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 APOL5Q9BWW9 433 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 ANKEF1Q9NU02 776 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 BLOC1S4Q9NUP1 217 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PARP3Q9Y6F1 533 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 LRRC37AA6NMS7 1700 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PPEF1O14829 653 aaPredicted RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 FBXO21O94952 628 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PCCAP05165 728 aaPredicted RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 ATP6V1B1P15313 513 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 RXRAP19793 462 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 S100A1P23297 94 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 CSTF2P33240 577 aaKnown RBP eCLIP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 EVI2BP34910 448 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 LIFRP42702 1097 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 ZNF598Q86UK7 904 aaKnown RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 CAND1Q86VP6 1230 aaKnown RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 RNF34Q969K3 372 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 SNF8Q96H20 258 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 TNIP3Q96KP6 325 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 GBP3Q9H0R5 595 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 EHMT1Q9H9B1 1298 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 ZNF112Q9UJU3 913 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 R3HDM2Q9Y2K5 976 aaKnown RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PCDHB2Q9Y5E7 798 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 NEDD4P46934 1319 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 NVLO15381 856 aaKnown RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 HOXC11O43248 304 aaPredicted RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 TUBBP07437 444 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 ETV1P50549 477 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 MAP3K12Q12852 859 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 RTN1Q16799 776 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 LETM2Q2VYF4 491 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 GKAP1Q5VSY0 366 aaPredicted RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 SGMS1Q86VZ5 419 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 SYTL1Q8IYJ3 562 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 CABS1Q96KC9 395 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 RPGRIP1Q96KN7 1286 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 TTC25Q96NG3 672 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 AIFM3Q96NN9 605 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 B3GNT4Q9C0J1 378 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 C8orf33Q9H7E9 229 aaPredicted RBP7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 PSTPIP2Q9H939 334 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 NLRC4Q9NPP4 1024 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 EFR3BQ9Y2G0 817 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 SLX4Q8IY92 1834 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 COL4A5P29400 1685 aa7.06□□□□□ -1.28
TM9SF4-202ENST00000398022 STMND1H3BQB6 276 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 INO80B-WBP1J3KQ70 363 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 POLR2DO15514 142 aaKnown RBP7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 SULT1B1O43704 296 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 STRNO43815 780 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 BMP15O95972 392 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 PENKP01210 267 aaPredicted RBP7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 RHOXF2BP0C7M4 288 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 HOXC12P31275 282 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 SLC12A2P55011 1212 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 MAP3K9P80192 1104 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 CCDC38Q502W7 563 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 IKBIPQ70UQ0 350 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 SPATA24Q86W54 205 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 DIS3L2Q8IYB7 885 aaKnown RBP7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 SCYL3Q8IZE3 742 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 CRACR2BQ8N4Y2 399 aaPredicted RBP7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 LSMEM1Q8N8F7 131 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 INTS12Q96CB8 462 aaKnown RBP7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 HIC2Q96JB3 615 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 FAM161BQ96MY7 647 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 HNRNPABQ99729 332 aaKnown RBP7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 RHOXF2Q9BQY4 288 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 ISCA1Q9BUE6 129 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 DRC3Q9H069 523 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 NCOR1P1Q9H4R4 102 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 MAN1B1Q9UKM7 699 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 ANO9A1A5B4 782 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 CCDC151A5D8V7 595 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 VWA3AA6NCI4 1184 aa7.05□□□□□ -1.28
TM9SF4-202ENST00000398022 UBXN1Q04323 297 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms