RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SKIP12755 728 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 BMP6P22004 513 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 PSMA2P25787 234 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 GRAMD1BQ3KR37 738 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 CCDC93Q567U6 631 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 ZC3H18Q86VM9 953 aaKnown RBP11.49□□□□□ -0.57
CCDC40-204ENST00000397545 PARP9Q8IXQ6 854 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 SYT2Q8N9I0 419 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-204ENST00000397545 MDM1Q8TC05 714 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 COA1Q9GZY4 146 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 KLHL11Q9NVR0 708 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 CNTNAP5Q8WYK1 1306 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 GRID2IPA4D2P6 1211 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 GOLGA8RI6L899 631 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 IPO5O00410 1097 aaKnown RBP11.49□□□□□ -0.57
CCDC40-204ENST00000397545 SOX5P35711 763 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 GPSM2P81274 684 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 GPS1Q13098 491 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 SYCP2LQ5T4T6 812 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 GJB7Q6PEY0 223 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 PIP4K2CQ8TBX8 421 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 DDX27Q96GQ7 796 aaKnown RBP11.49□□□□□ -0.57
CCDC40-204ENST00000397545 LRRC37BQ96QE4 947 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 RMDN3Q96TC7 470 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 C7orf25Q9BPX7 421 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 EPN3Q9H201 632 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 SLITRK6Q9H5Y7 841 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 SCOCQ9UIL1 159 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 CSADQ9Y600 493 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 A0A087X0T9 212 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 LOC102724159A0A0B4J2E5 919 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 SSU72P8A0A1W2PR75 194 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 WDR64B1ANS9 1081 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 FAM228BP0C875 321 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 CHRNA3P32297 505 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 PRELPP51888 382 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 PWP2Q15269 919 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 Q3C1V9 767 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 ZC2HC1CQ53FD0 456 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 FAM47CQ5HY64 1035 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 SLC35G2Q8TBE7 412 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 LXNQ9BS40 222 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 EDEM3Q9BZQ6 932 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 RAVER2Q9HCJ3 691 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 AKT3Q9Y243 479 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 A0A087X0B3 334 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 ZBED1O96006 694 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 RNASELQ05823 741 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 MTMR1Q13613 665 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 RC3H1Q5TC82 1133 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 ANKRD36BP1Q96IX9 119 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 PRMT1Q99873 361 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 SMYD3Q9H7B4 428 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 ADAMTS3O15072 1205 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 PRPSAP2O60256 369 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 MX2P20592 715 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 MKRN3Q13064 507 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 RBBP5Q15291 538 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 LONRF1Q17RB8 773 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 TRIM65Q6PJ69 517 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 ANKS1AQ92625 1134 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 HEXIM2Q96MH2 286 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 AS3MTQ9HBK9 375 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 BCAP29Q9UHQ4 241 aa11.48□□□□□ -0.57
CCDC40-204ENST00000397545 FNDC3AQ9Y2H6 1198 aaKnown RBP11.48□□□□□ -0.57
CCDC40-204ENST00000397545 ANKRD36CQ5JPF3 1778 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 CFAP69A5D8W1 941 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 MYBP10242 640 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 CHN1P15882 459 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 KIAA1755Q5JYT7 1200 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 RCSD1Q6JBY9 416 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 PRR5LQ6MZQ0 368 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 DPY19L2Q6NUT2 758 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 CYFIP1Q7L576 1253 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 ZBED8Q8IZ13 594 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 PPM1NQ8N819 430 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 GABPB2Q8TAK5 448 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-204ENST00000397545 REEP2Q9BRK0 252 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 TRIM55Q9BYV6 548 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 ECT2Q9H8V3 914 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 STXBP3O00186 592 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 TLR3O15455 904 aaKnown RBP11.47□□□□□ -0.57
CCDC40-204ENST00000397545 CLDN3O15551 220 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 TJP3O95049 919 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 EPHB1P54762 984 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 NBPF9Q3BBW0 867 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 DCAF15Q66K64 600 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 NSMCE1Q8WV22 266 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 HNRNPLLQ8WVV9 542 aaKnown RBP11.47□□□□□ -0.57
CCDC40-204ENST00000397545 MTMR4Q9NYA4 1195 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 KIF3CO14782 793 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 ATMINO43313 823 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-204ENST00000397545 SASH3O75995 380 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 PDIA5Q14554 519 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 LRRC31Q6UY01 552 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 KIF2BQ8N4N8 673 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 TTC1Q99614 292 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 PLAGL2Q9UPG8 496 aa11.47□□□□□ -0.57
CCDC40-204ENST00000397545 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.47□□□□□ -0.57
CCDC40-204ENST00000397545 PHLPP1O60346 1717 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms