RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KIF28PB7ZC32 967 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 PI4K2BG5E9Z4 385 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 GOLGA8MH3BSY2 632 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 FOXN1O15353 648 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 GUCY1A3Q02108 690 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 TNFAIP2Q03169 654 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 MTMR1Q13613 665 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 KIF22Q14807 665 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 MAPK6Q16659 721 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 ZNF394Q53GI3 561 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 RC3H1Q5TC82 1133 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 RASGRP2Q7LDG7 609 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SPATA21Q7Z572 469 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 PASD1Q8IV76 773 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 LRRC1Q9BTT6 524 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 WWP1Q9H0M0 922 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 GTSE1Q9NYZ3 720 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 HEY1Q9Y5J3 304 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 STXBP3O00186 592 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 E2F6O75461 281 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 DMPKQ09013 629 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 CYLC2Q14093 348 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 LRRC14Q15048 493 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 TMEM259Q4ZIN3 620 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SYDE1Q6ZW31 735 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 GLYCTKQ8IVS8 523 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 EXT2Q93063 718 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 FNDC3AQ9Y2H6 1198 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SUPT3HO75486 399 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SDC4P31431 198 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 ZBED8Q8IZ13 594 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 ICA1LQ8NDH6 482 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SPDYE1Q8NFV5 336 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SNRNP27Q8WVK2 155 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 PIGBQ92521 554 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 CCSER1Q9C0I3 900 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 AMACRQ9UHK6 382 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 KIF1BO60333 1816 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 RNF103-CHMP3A0A140T963 221 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 H0YC42 278 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 DIAPH2O60879 1101 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SERPINB4P48594 390 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 TTC39CQ8N584 583 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 ANKRD7Q92527 254 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 UTYO14607 1347 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 TMEM94Q12767 1356 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SAMD9LQ8IVG5 1584 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L15C9J2P7 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L13C9JLJ4 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L11C9JVI0 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L18D6R9N7 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L22D6RA61 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L17D6RBQ6 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L19D6RCP7 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L20D6RJB6 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 EIF3HO15372 352 aaKnown RBP eCLIP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 GH2P01242 217 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 P4HBP07237 508 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L24Q0WX57 530 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 LAMB3Q13751 1172 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L6PQ6QN14 398 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 CDKL3Q8IVW4 592 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 NCLNQ969V3 563 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 RMI1Q9H9A7 625 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC13A4Q9UKG4 626 aa10.87□□□□□ -0.67
LIMCH1-203ENST00000396595 UGGT1Q9NYU2 1555 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 CFAP69A5D8W1 941 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 IQCA1LA6NCM1 817 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SYCE1LA8MT33 242 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC16A4O15374 487 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 ORC4O43929 436 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 PRDX5P30044 214 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SFNP31947 248 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 NCAPHQ15003 741 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 ZNF746Q6NUN9 644 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 TEX9Q8N6V9 391 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 FAM213AQ9BRX8 229 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 MRPS26Q9BYN8 205 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 MAGEB5Q9BZ81 275 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 DENND3A2RUS2 1198 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 POTEFA5A3E0 1075 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 PP2D1A8MPX8 630 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 POTEIP0CG38 1075 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 KITP10721 976 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 CIITAP33076 1130 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 EXOSC10Q01780 885 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 TAP1Q03518 808 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 EFTUD2Q15029 972 aaKnown RBP eCLIP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 INAQ16352 499 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 POTEGQ6S5H5 508 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 POTEEQ6S8J3 1075 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 DSTYKQ6XUX3 929 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 FAM210AQ96ND0 272 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 BFARQ9NZS9 450 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SMG5Q9UPR3 1016 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 GSG1L2A8MUP6 293 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 H3BRJ5 948 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SRGNP10124 158 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms