RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 C6orf118Q5T5N4 469 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 P3H4Q92791 437 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 CD101Q93033 1021 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 BTBD6Q96KE9 485 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 RPS6KC1Q96S38 1066 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 KCND2Q9NZV8 630 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 TPX2Q9ULW0 747 aaKnown RBP13.68□□□□□ -0.22
SHMT1-205ENST00000395684 PTPN22Q9Y2R2 807 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 UBR3Q6ZT12 1888 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 PFASO15067 1338 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 LOC102724159A0A0B4J2E5 919 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 ASAP2O43150 1006 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 AGTP01019 485 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 VAMP7P51809 220 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 PWP2Q15269 919 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 SNCBQ16143 134 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 EPC2Q52LR7 807 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 TNFAIP8L3Q5GJ75 292 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 B3GNT9Q6UX72 402 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 COL23A1Q86Y22 540 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 PLEKHO2Q8TD55 490 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 CBWD1Q9BRT8 395 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 ZNF577Q9BSK1 485 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 MRIQ9BWK5 157 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 INTS9Q9NV88 658 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 DBR1Q9UK59 544 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 SPATA31A6Q5VVP1 1343 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 K7ENM7 598 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 RTN2O75298 545 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 DNAJC8O75937 253 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 POLR2MP0CAP2 368 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 RARAP10276 462 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 STAT2P52630 851 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 ADCY2Q08462 1091 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 AUHQ13825 339 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 SIX1Q15475 284 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 RBM26Q5T8P6 1007 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC174Q6PII3 467 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 INTS8Q75QN2 995 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 PODNQ7Z5L7 613 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 NOP9Q86U38 636 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 ART4Q93070 314 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 TMEM109Q9BVC6 243 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 MTRF1LQ9UGC7 380 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 ARHGEF35A5YM69 484 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 RARGP13631 454 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 MUTP22033 750 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 COILP38432 576 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 MKRN4PQ13434 485 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 MYBPC2Q14324 1141 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 CYP1B1Q16678 543 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 PREPLQ4J6C6 727 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC38Q502W7 563 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 SLC13A5Q86YT5 568 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC105Q8IYK2 499 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 EPS8L1Q8TE68 723 aa13.67□□□□□ -0.22
SHMT1-205ENST00000395684 POP1Q99575 1024 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 NOCTQ9UK39 431 aaKnown RBP13.67□□□□□ -0.22
SHMT1-205ENST00000395684 THSD7AQ9UPZ6 1657 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 VIL1P09327 827 aaKnown RBP13.66□□□□□ -0.22
SHMT1-205ENST00000395684 RDXP35241 583 aaKnown RBP13.66□□□□□ -0.22
SHMT1-205ENST00000395684 IFNAR2P48551 515 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 LLGL1Q15334 1064 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 DACT2Q5SW24 774 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 WLSQ5T9L3 541 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 SEL1L2Q5TEA6 688 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 PADI6Q6TGC4 694 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 ELAC2Q9BQ52 826 aaKnown RBP13.66□□□□□ -0.22
SHMT1-205ENST00000395684 WNT8AQ9H1J5 351 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 TDRD3Q9H7E2 651 aaKnown RBP13.66□□□□□ -0.22
SHMT1-205ENST00000395684 PARP2Q9UGN5 583 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 DDX39AO00148 427 aaKnown RBP13.66□□□□□ -0.22
SHMT1-205ENST00000395684 RASGRF2O14827 1237 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 TP73O15350 636 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 MGRN1O60291 552 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 GGPS1O95749 300 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 GBP1P32455 592 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 SLC47A2Q86VL8 602 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 ANKS4BQ8N8V4 417 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 ACER1Q8TDN7 264 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 WDR11Q9BZH6 1224 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC134Q9H6E4 229 aa13.66□□□□□ -0.22
SHMT1-205ENST00000395684 IPO5O00410 1097 aaKnown RBP13.65□□□□□ -0.22
SHMT1-205ENST00000395684 CYP26A1O43174 497 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 NPM3O75607 178 aaKnown RBP13.65□□□□□ -0.22
SHMT1-205ENST00000395684 MTA2O94776 668 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 NPR1P16066 1061 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 CETN1Q12798 172 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 ITIH4Q14624 930 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 SLMAPQ14BN4 828 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 CNGA2Q16280 664 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 MEX3CQ5U5Q3 659 aaKnown RBP13.65□□□□□ -0.22
SHMT1-205ENST00000395684 EXOC3L1Q86VI1 746 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 TAX1BP1Q86VP1 789 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 FAM71AQ8IYT1 594 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 KREMEN1Q96MU8 473 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 SCLT1Q96NL6 688 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 P4HA2O15460 535 aa13.65□□□□□ -0.22
SHMT1-205ENST00000395684 VIMP08670 466 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms