RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TAS1R3Q7RTX0 852 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 CDR2LQ86X02 465 aaPredicted RBP23.9■■□□□ 1.42
CLN3-207ENST00000395653 MYCT1Q8N699 235 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 DDX12PQ92771 950 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 PYM1Q9BRP8 204 aaKnown RBP23.9■■□□□ 1.42
CLN3-207ENST00000395653 PLVAPQ9BX97 442 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 TNMDQ9H2S6 317 aa23.9■■□□□ 1.42
CLN3-207ENST00000395653 MYMKA6NI61 221 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 MEIS3P2A8K0S8 358 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 LPXNO60711 386 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 POU3F3P20264 500 aaPredicted RBP23.89■■□□□ 1.41
CLN3-207ENST00000395653 LONRF3Q496Y0 759 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 NT5DC1Q5TFE4 455 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 DYMQ7RTS9 669 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 HACE1Q8IYU2 909 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 DHX58Q96C10 678 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 MRPL4Q9BYD3 311 aaKnown RBP23.89■■□□□ 1.41
CLN3-207ENST00000395653 RSAD1Q9HA92 442 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 UBN1Q9NPG3 1134 aa23.89■■□□□ 1.41
CLN3-207ENST00000395653 TYW1Q9NV66 732 aaKnown RBP23.89■■□□□ 1.41
CLN3-207ENST00000395653 H3BNC9 293 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 POLR2DO15514 142 aaKnown RBP23.88■■□□□ 1.41
CLN3-207ENST00000395653 TRAK2O60296 914 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 NPTXRO95502 500 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 MAPTP10636 758 aaKnown RBP23.88■■□□□ 1.41
CLN3-207ENST00000395653 ITGA4P13612 1032 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 ATF7IP2Q5U623 682 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 GDPD5Q8WTR4 605 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 DNAJC19Q96DA6 116 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 ADPGKQ9BRR6 497 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 C11orf84Q9BUA3 381 aaPredicted RBP23.88■■□□□ 1.41
CLN3-207ENST00000395653 LRRC27Q9C0I9 530 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 ZHX3Q9H4I2 956 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 CWH43Q9H720 699 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 MAGEF1Q9HAY2 307 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 AAASQ9NRG9 546 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 KBTBD4Q9NVX7 518 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 TNFSF13BQ9Y275 285 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 USP20Q9Y2K6 914 aa23.88■■□□□ 1.41
CLN3-207ENST00000395653 KIAA1671Q9BY89 1806 aa23.87■■□□□ 1.41
CLN3-207ENST00000395653 OFD1O75665 1012 aa23.87■■□□□ 1.41
CLN3-207ENST00000395653 CMA1P23946 247 aa23.87■■□□□ 1.41
CLN3-207ENST00000395653 STRN3Q13033 797 aa23.87■■□□□ 1.41
CLN3-207ENST00000395653 LRRC55Q6ZSA7 311 aa23.87■■□□□ 1.41
CLN3-207ENST00000395653 HAUS6Q7Z4H7 955 aa23.87■■□□□ 1.41
CLN3-207ENST00000395653 P2RX5Q93086 422 aa23.87■■□□□ 1.41
CLN3-207ENST00000395653 NXF3Q9H4D5 531 aaKnown RBP23.87■■□□□ 1.41
CLN3-207ENST00000395653 MYO9BQ13459 2157 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 LAG3P18627 525 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 IGFBP4P22692 258 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 ABCD1P33897 745 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 GPM6BQ13491 265 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 DCAF4L1Q3SXM0 396 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 NOMO2Q5JPE7 1267 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 SPOUT1Q5T280 376 aaKnown RBP23.86■■□□□ 1.41
CLN3-207ENST00000395653 EEF1DP3Q658K8 133 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 FAM178BQ8IXR5 827 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 SLC17A8Q8NDX2 589 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 FIZ1Q96SL8 496 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 ACO2Q99798 780 aaKnown RBP23.86■■□□□ 1.41
CLN3-207ENST00000395653 RNF39Q9H2S5 420 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 LMCD1Q9NZU5 365 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 HCSTQ9UBK5 93 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 SEL1LQ9UBV2 794 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 KCNH3Q9ULD8 1083 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 HES2Q9Y543 173 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 TCHHQ07283 1943 aa23.86■■□□□ 1.41
CLN3-207ENST00000395653 K7ENM7 598 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 INPPL1O15357 1258 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 GTPBP6O43824 516 aaPredicted RBP23.85■■□□□ 1.41
CLN3-207ENST00000395653 GAP43P17677 238 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 AMPD3Q01432 767 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 CSPP1Q1MSJ5 1256 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 APBB1IPQ7Z5R6 666 aaPredicted RBP23.85■■□□□ 1.41
CLN3-207ENST00000395653 TARS2Q9BW92 718 aaKnown RBP23.85■■□□□ 1.41
CLN3-207ENST00000395653 INPP5FQ9Y2H2 1132 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 GIT1Q9Y2X7 761 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 PCDHB12Q9Y5F1 795 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 ZMYM2Q9UBW7 1377 aa23.85■■□□□ 1.41
CLN3-207ENST00000395653 FRMD3A2A2Y4 597 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 ZPBP2Q6X784 338 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 URGCPQ8TCY9 931 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 ST6GALNAC4Q9H4F1 302 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 GDPD2Q9HCC8 539 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 PTPRHQ9HD43 1115 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 TBC1D13Q9NVG8 400 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 KANSL3Q9P2N6 904 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 HPSEQ9Y251 543 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 MTCH2Q9Y6C9 303 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 FAM237AA0A1B0GTK4 181 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 A0A1W2PQ27 194 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 A0A1W2PQ64 194 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 A0A1W2PQD8 194 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 PFKFB1P16118 471 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 PROZP22891 400 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 SFR1Q86XK3 245 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 COLGALT1Q8NBJ5 622 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 STAMQ92783 540 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 APOL6Q9BWW8 343 aa23.84■■□□□ 1.41
CLN3-207ENST00000395653 TRIM9Q9C026 710 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms