RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 UXS1Q8NBZ7 420 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 SPASTQ9UBP0 616 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 MAN1B1Q9UKM7 699 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 ASXL1Q8IXJ9 1541 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 ZNF157P51786 506 aaPredicted RBP13.17□□□□□ -0.3
CHD3-203ENST00000380358 FAM136AQ96C01 138 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 ELMO2Q96JJ3 720 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 CLMNQ96JQ2 1002 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 ASCC2Q9H1I8 757 aaPredicted RBP13.17□□□□□ -0.3
CHD3-203ENST00000380358 ARHGEF3Q9NR81 526 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 ASNSD1Q9NWL6 643 aa13.17□□□□□ -0.3
CHD3-203ENST00000380358 ALDH1A2O94788 518 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 KLHL18O94889 574 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 OR1G1P47890 313 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 MAGEB5Q9BZ81 275 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 YIPF3Q9GZM5 350 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 MAP3K20Q9NYL2 800 aaKnown RBP13.16□□□□□ -0.3
CHD3-203ENST00000380358 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.16□□□□□ -0.3
CHD3-203ENST00000380358 FAM32AQ9Y421 112 aaKnown RBP13.16□□□□□ -0.3
CHD3-203ENST00000380358 ATP6V1C1P21283 382 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 PHKG1Q16816 387 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 FOXR1Q6PIV2 292 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 NBPF15Q8N660 670 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 SH3RF3Q8TEJ3 882 aaPredicted RBP13.16□□□□□ -0.3
CHD3-203ENST00000380358 SCUBE2Q9NQ36 999 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 GABBR1Q9UBS5 961 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.16□□□□□ -0.3
CHD3-203ENST00000380358 PTPN23Q9H3S7 1636 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 GPSM2P81274 684 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 MCTP2Q6DN12 878 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 BTN2A1Q7KYR7 527 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 FOPNLQ96NB1 174 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 ATP6V0A4Q9HBG4 840 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 ADAMTS1Q9UHI8 967 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 GRAP2O75791 330 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 CYP2B6P20813 491 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 PKP1Q13835 747 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 RSPH9Q9H1X1 276 aaPredicted RBP13.16□□□□□ -0.3
CHD3-203ENST00000380358 ADCY9O60503 1353 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 ADCK1Q86TW2 530 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 C17orf80Q9BSJ5 609 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 CD274Q9NZQ7 290 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 SPP2Q13103 211 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 AKIRIN2Q53H80 203 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 RD3Q7Z3Z2 195 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 TBC1D19Q8N5T2 526 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 AIFM3Q96NN9 605 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 HAUS4Q9H6D7 363 aa13.16□□□□□ -0.3
CHD3-203ENST00000380358 DGKIO75912 1065 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 ATP5JP18859 108 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 MAPRE1Q15691 268 aaKnown RBP13.15□□□□□ -0.3
CHD3-203ENST00000380358 PIM2Q9P1W9 311 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 PLAAQ9Y263 795 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 C6orf222P0C671 652 aaPredicted RBP13.15□□□□□ -0.3
CHD3-203ENST00000380358 HPCAP84074 193 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 DEUP1Q05D60 604 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 SHROOM1Q2M3G4 852 aaPredicted RBP13.15□□□□□ -0.3
CHD3-203ENST00000380358 RCSD1Q6JBY9 416 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 RNF123Q5XPI4 1314 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 KPNA7A9QM74 516 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 MAN2A1Q16706 1144 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 PCDHA6Q9UN73 950 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 PCDHA8Q9Y5H6 950 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 RASSF9O75901 435 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 RWDD2BP57060 319 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 EFHC2Q5JST6 749 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 CCDC81Q6ZN84 652 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 CLEC4FQ8N1N0 589 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 FBXO18Q8NFZ0 1043 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 DNAJC12Q9UKB3 198 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L15C9J2P7 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L13C9JLJ4 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L11C9JVI0 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L18D6R9N7 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L22D6RA61 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L17D6RBQ6 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L19D6RCP7 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L20D6RJB6 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 SEMA3EO15041 775 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 PALMO75781 387 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 GNA15P30679 374 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 RPS7P62081 194 aaKnown RBP13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L24Q0WX57 530 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 USP17L6PQ6QN14 398 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 HDDC2Q7Z4H3 204 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 LEMD2Q8NC56 503 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 ITIH6Q6UXX5 1313 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 PRAMEF22A3QJZ6 481 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 PARNO95453 639 aaKnown RBP13.15□□□□□ -0.3
CHD3-203ENST00000380358 CYP2D6P10635 497 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 CDK8P49336 464 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 PPP2R3CQ969Q6 453 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 MID2Q9UJV3 735 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 ZBTB1Q9Y2K1 713 aa13.15□□□□□ -0.3
CHD3-203ENST00000380358 IQCA1LA6NCM1 817 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 HIST1H2AGP0C0S8 130 aaPredicted RBP13.14□□□□□ -0.31
CHD3-203ENST00000380358 HIST1H2ADP20671 130 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 SLFNL1Q499Z3 407 aa13.14□□□□□ -0.31
CHD3-203ENST00000380358 HIST1H2AHQ96KK5 128 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms