RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CHKAP35790 457 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 SNX1Q13596 522 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 SPDYCQ5MJ68 293 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 VSTM1Q6UX27 236 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 ERICH1Q86X53 443 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 ARHGEF19Q8IW93 802 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 TPH2Q8IWU9 490 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 ZSWIM2Q8NEG5 633 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 L3MBTL3Q96JM7 780 aaPredicted RBP19.87■□□□□ 0.77
CCDC3-201ENST00000378825 AAASQ9NRG9 546 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 VAV3Q9UKW4 847 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 OAS1P00973 400 aaKnown RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 TRIP13Q15645 432 aaPredicted RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 TNFAIP8L3Q5GJ75 292 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 CDC42EP5Q6NZY7 148 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 FITM2Q8N6M3 262 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 NAP1L3Q99457 506 aaPredicted RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 ZSWIM1Q9BR11 485 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 CDC42EP4Q9H3Q1 356 aaKnown RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 DBNDD1Q9H9R9 158 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 ZNF219Q9P2Y4 722 aaPredicted RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 RASAL2Q9UJF2 1139 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 G3V3G9 751 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 FAM13AO94988 1023 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 PEX5P50542 639 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 DRG2P55039 364 aaKnown RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 CRYMQ14894 314 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 GPATCH4Q5T3I0 446 aaKnown RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 DCAF8Q5TAQ9 597 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 NSMFQ6X4W1 530 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 C1orf54Q8WWF1 131 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 ARHGEF2Q92974 986 aaKnown RBP19.86■□□□□ 0.77
CCDC3-201ENST00000378825 PCDHB18PQ96TA0 734 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 AGPAT1Q99943 283 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 KCNK9Q9NPC2 374 aa19.86■□□□□ 0.77
CCDC3-201ENST00000378825 CTNNA2P26232 953 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 CHRNA3P32297 505 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 ZNF268Q14587 947 aaPredicted RBP19.85■□□□□ 0.77
CCDC3-201ENST00000378825 SP8Q8IXZ3 490 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 ERMNQ8TAM6 284 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 PCIF1Q9H4Z3 704 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 CCDC134Q9H6E4 229 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 ARHGEF10LQ9HCE6 1279 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 UBE2TQ9NPD8 197 aaPredicted RBP19.85■□□□□ 0.77
CCDC3-201ENST00000378825 TBK1Q9UHD2 729 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 USP15Q9Y4E8 981 aaPredicted RBP19.85■□□□□ 0.77
CCDC3-201ENST00000378825 MYL7Q01449 175 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 MGAT5Q09328 741 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 CYP4X1Q8N118 509 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 ANKLE1Q8NAG6 615 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 FIZ1Q96SL8 496 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 COA1Q9GZY4 146 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 WRAP73Q9P2S5 460 aaPredicted RBP19.85■□□□□ 0.77
CCDC3-201ENST00000378825 MTRF1LQ9UGC7 380 aaKnown RBP19.85■□□□□ 0.77
CCDC3-201ENST00000378825 PCYOX1Q9UHG3 505 aa19.85■□□□□ 0.77
CCDC3-201ENST00000378825 A0A1B0GUA9 196 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 DLATP10515 647 aaKnown RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 UBXN2AP68543 259 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 SIX1Q15475 284 aaPredicted RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 TBC1D10BQ4KMP7 808 aaPredicted RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 RPUSD2Q8IZ73 545 aaKnown RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 KCNV2Q8TDN2 545 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 KLHL29Q96CT2 875 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 DNAJC18Q9H819 358 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 CNOT7Q9UIV1 285 aaKnown RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 ATP8B3O60423 1300 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 EEF2P13639 858 aaKnown RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 COILP38432 576 aaPredicted RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 PDE6CP51160 858 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 GALNTL6Q49A17 601 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 CGB2Q6NT52 195 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 KIAA0825Q8IV33 1275 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 LMO3Q8TAP4 145 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 ATG4AQ8WYN0 398 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 AGPAT3Q9NRZ7 376 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 DIS3Q9Y2L1 958 aaKnown RBP19.84■□□□□ 0.77
CCDC3-201ENST00000378825 SYNGAP1Q96PV0 1343 aa19.84■□□□□ 0.77
CCDC3-201ENST00000378825 UBR3Q6ZT12 1888 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 CALCAP01258 141 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 ALAS1P13196 640 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 RARGP13631 454 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 CHRNB2P17787 502 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 PRUNE1Q86TP1 453 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 ART4Q93070 314 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 DYDC2Q96IM9 177 aa19.83■□□□□ 0.77
CCDC3-201ENST00000378825 RSRC1Q96IZ7 334 aaKnown RBP19.83■□□□□ 0.77
CCDC3-201ENST00000378825 EYA4O95677 639 aa19.83■□□□□ 0.76
CCDC3-201ENST00000378825 CETPP11597 493 aa19.83■□□□□ 0.76
CCDC3-201ENST00000378825 VPS41P49754 854 aa19.83■□□□□ 0.76
CCDC3-201ENST00000378825 NAIF1Q69YI7 327 aaPredicted RBP19.83■□□□□ 0.76
CCDC3-201ENST00000378825 APOBEC3HQ6NTF7 200 aaKnown RBP19.83■□□□□ 0.76
CCDC3-201ENST00000378825 BZW1Q7L1Q6 419 aaKnown RBP19.83■□□□□ 0.76
CCDC3-201ENST00000378825 SPATA31A6Q5VVP1 1343 aa19.83■□□□□ 0.76
CCDC3-201ENST00000378825 CLDN3O15551 220 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 SGPL1O95470 568 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 RIPK1Q13546 671 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 C1orf186Q6ZWK4 172 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 FAM118BQ9BPY3 351 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 OLFML3Q9NRN5 406 aa19.82■□□□□ 0.76
CCDC3-201ENST00000378825 CCNHP51946 323 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms