RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 TEKT4Q8WW24 435 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 RPS6KC1Q96S38 1066 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 ZSWIM1Q9BR11 485 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 BHMT2Q9H2M3 363 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 DNM3Q9UQ16 869 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 LAMB1P07942 1786 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 KLHL33A6NCF5 533 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 THAP12O43422 761 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 PEX11AO75192 247 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 CETPP11597 493 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 POLD1P28340 1107 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 NMT1P30419 496 aaKnown RBP17.02■□□□□ 0.32
CKAP4-201ENST00000378026 BTDP43251 543 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 RWDD2BP57060 319 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 KCTD1Q719H9 257 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 FAM13CQ8NE31 585 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 MRRFQ96E11 262 aaKnown RBP17.02■□□□□ 0.32
CKAP4-201ENST00000378026 JMJD4Q9H9V9 463 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 AAASQ9NRG9 546 aa17.02■□□□□ 0.32
CKAP4-201ENST00000378026 TYW1Q9NV66 732 aaKnown RBP17.02■□□□□ 0.32
CKAP4-201ENST00000378026 CBX6O95503 412 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 GNAZP19086 355 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 HOXA7P31268 230 aaPredicted RBP17.02■□□□□ 0.31
CKAP4-201ENST00000378026 SETDB1Q15047 1291 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 PRR16Q569H4 304 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 NSMFQ6X4W1 530 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 ATG4AQ8WYN0 398 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 PPP1R12CQ9BZL4 782 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 ROPN1BQ9BZX4 212 aaPredicted RBP17.02■□□□□ 0.31
CKAP4-201ENST00000378026 KIAA1683Q9H0B3 1180 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 ROPN1Q9HAT0 212 aaPredicted RBP17.02■□□□□ 0.31
CKAP4-201ENST00000378026 SLCO1B3Q9NPD5 702 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 DLGAP2Q9P1A6 1054 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 ANKIB1Q9P2G1 1089 aa17.02■□□□□ 0.31
CKAP4-201ENST00000378026 LIN7AO14910 233 aaPredicted RBP17.01■□□□□ 0.31
CKAP4-201ENST00000378026 ECEL1O95672 775 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 CCNB1P14635 433 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 CTNNA2P26232 953 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 ANXA13P27216 316 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 KRT17Q04695 432 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 SF3B3Q15393 1217 aaKnown RBP17.01■□□□□ 0.31
CKAP4-201ENST00000378026 ACP6Q9NPH0 428 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 TXLNGQ9NUQ3 528 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 MTUS1Q9ULD2 1270 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 PITPNM2Q9BZ72 1349 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 USP17L10C9JJH3 530 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 CLDN3O15551 220 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 TBCAO75347 108 aaKnown RBP17.01■□□□□ 0.31
CKAP4-201ENST00000378026 TPBGLP0DKB5 382 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 RFC5P40937 340 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 FMO5P49326 533 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 RNF220Q5VTB9 566 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 RNF207Q6ZRF8 634 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 STK32AQ8WU08 396 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 SERPINB12Q96P63 405 aa17.01■□□□□ 0.31
CKAP4-201ENST00000378026 A0A1W2PRG0 241 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 PTDSS1P48651 473 aaKnown RBP17■□□□□ 0.31
CKAP4-201ENST00000378026 RAB27AP51159 221 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 MUM1Q2TAK8 710 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 HYIQ5T013 277 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 C16orf86Q6ZW13 317 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 KIAA0825Q8IV33 1275 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 FAM118BQ9BPY3 351 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 GPR88Q9GZN0 384 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17■□□□□ 0.31
CKAP4-201ENST00000378026 CYP39A1Q9NYL5 469 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 DCCP43146 1447 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 UBAP1LF5GYI3 381 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 TOM1O60784 492 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 LGR5O75473 907 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 CHRNB2P17787 502 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 TAC1P20366 129 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 PICALMQ13492 652 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 MTFR1Q15390 333 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 MIGA2Q7L4E1 593 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 SLC13A5Q86YT5 568 aaPredicted RBP17■□□□□ 0.31
CKAP4-201ENST00000378026 C9orf72Q96LT7 481 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 LRRC37BQ96QE4 947 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 SNED1Q8TER0 1413 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 TGFB1I1O43294 461 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 TTLL1O95922 423 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 FESP07332 822 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 ATP5DP30049 168 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 PEX5P50542 639 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 POLE2P56282 527 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 TMED2Q15363 201 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 ARHGEF18Q6ZSZ5 1173 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 TRMT10CQ7L0Y3 403 aaKnown RBP17■□□□□ 0.31
CKAP4-201ENST00000378026 TEX9Q8N6V9 391 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 UCMAQ8WVF2 138 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 AGPAT1Q99943 283 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 TBC1D10AQ9BXI6 508 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 INTS2Q9H0H0 1204 aaKnown RBP17■□□□□ 0.31
CKAP4-201ENST00000378026 DNAJC18Q9H819 358 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 NAALADL1Q9UQQ1 740 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 CHKBQ9Y259 395 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 C2CD2Q9Y426 696 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 LRRC42Q9Y546 428 aa17■□□□□ 0.31
CKAP4-201ENST00000378026 LOC102724428A0A0B4J2F2 783 aa16.99■□□□□ 0.31
CKAP4-201ENST00000378026 PNMA6FA0A0J9YX94 578 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms