RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 MAGEB2O15479 319 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 NPTX2P47972 431 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 RNASELQ05823 741 aaKnown RBP15.55■□□□□ 0.08
TCOF1-202ENST00000377797 HVCN1Q96D96 273 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 NUP85Q9BW27 656 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 TFR2Q9UP52 801 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 VIRMAQ69YN4 1812 aaKnown RBP15.55■□□□□ 0.08
TCOF1-202ENST00000377797 LRP6O75581 1613 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 GBP1P32455 592 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 AP3M2P53677 418 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 GALCP54803 685 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 LMNB2Q03252 620 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 ZNF211Q13398 564 aaPredicted RBP15.55■□□□□ 0.08
TCOF1-202ENST00000377797 WDR72Q3MJ13 1102 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 GJB7Q6PEY0 223 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 MROH8Q9H579 483 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 PLCB1Q9NQ66 1216 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 A1CFQ9NQ94 594 aaKnown RBP15.55■□□□□ 0.08
TCOF1-202ENST00000377797 SAMD15Q9P1V8 674 aa15.55■□□□□ 0.08
TCOF1-202ENST00000377797 GUCY2CP25092 1073 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 GTF2A2P52657 109 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 PPP2R5CQ13362 524 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 EFCAB12Q6NXP0 572 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 NYAP1Q6ZVC0 841 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 TRPM4Q8TD43 1214 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 SREK1Q8WXA9 508 aaKnown RBP15.54■□□□□ 0.08
TCOF1-202ENST00000377797 HAUS1Q96CS2 278 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 A6NNZ2 444 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 PPP1R11O60927 126 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-202ENST00000377797 OAZ1P54368 228 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 PPP2R5DQ14738 602 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 TUBB8Q3ZCM7 444 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 REXO1L1PQ8IX06 675 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 NGRNQ9NPE2 291 aaKnown RBP15.54■□□□□ 0.08
TCOF1-202ENST00000377797 ATP8A1Q9Y2Q0 1164 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 SGK1O00141 431 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 ZRANB2O95218 330 aaKnown RBP eCLIP15.54■□□□□ 0.08
TCOF1-202ENST00000377797 SNRPFP62306 86 aaKnown RBP15.54■□□□□ 0.08
TCOF1-202ENST00000377797 VGLL4Q14135 290 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 MFSD14CQ5VZR4 134 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 METTL23Q86XA0 190 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 BEST2Q8NFU1 509 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 CNTN2Q02246 1040 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 ZBTB16Q05516 673 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 DSTYKQ6XUX3 929 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 CTAGE3PQ8IX95 158 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 BBOF1Q8ND07 529 aa15.54■□□□□ 0.08
TCOF1-202ENST00000377797 GBA2Q9HCG7 927 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-202ENST00000377797 COL1A1P02452 1464 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 PIK3CDO00329 1044 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 ATP1A2P50993 1020 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 DR1Q01658 176 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 LAMC2Q13753 1193 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 NCOA4Q13772 614 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 CASP8Q14790 479 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 KCTD16Q68DU8 428 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 CBWD2Q8IUF1 395 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 FBXO16Q8IX29 292 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 PALM2Q8IXS6 379 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 PLCD3Q8N3E9 789 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 KIF12Q96FN5 646 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 C6orf222P0C671 652 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 NIPA1Q7RTP0 329 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 CDR2LQ86X02 465 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 CCDC117Q8IWD4 279 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 FAM71BQ8TC56 605 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 TMEM8AQ9HCN3 771 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 NFU1Q9UMS0 254 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 SNX12Q9UMY4 172 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 PNMA6AP0CW24 399 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 PSMA2P25787 234 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 SSTR3P32745 418 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 FIGNQ5HY92 759 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 NME8Q8N427 588 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 DNERQ8NFT8 737 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 DNAJC7Q99615 494 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 PPANQ9NQ55 473 aaKnown RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 TADA3O75528 432 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 DHX9Q08211 1270 aaKnown RBP15.53■□□□□ 0.08
TCOF1-202ENST00000377797 DGKZQ13574 1117 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 TRIM65Q6PJ69 517 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 ARMCX2Q7L311 632 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 C4orf32Q8N8J7 132 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 DNAJC18Q9H819 358 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 SYNGAP1Q96PV0 1343 aa15.53■□□□□ 0.08
TCOF1-202ENST00000377797 C5P01031 1676 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 TMEM150BA6NC51 233 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 ASAP2O43150 1006 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 CDO1Q16878 200 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 TRIM59Q8IWR1 403 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 ACAP3Q96P50 834 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 IFT122Q9HBG6 1241 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 CYP3A7-CYP3A51PA0A087WV96 503 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 PRPSAP2O60256 369 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 HLA-DRAP01903 254 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 CALB1P05937 261 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 CYP3A7P24462 503 aa15.52■□□□□ 0.08
TCOF1-202ENST00000377797 TMEM62Q0P6H9 643 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms