RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 SKOR2Q2VWA4 1001 aaPredicted RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 CCDC178Q5BJE1 867 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 C6orf132Q5T0Z8 1188 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 TYW1BQ6NUM6 668 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 PKN3Q6P5Z2 889 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 PDZD4Q76G19 769 aaPredicted RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 OVCH2Q7RTZ1 564 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 SLC9B2Q86UD5 537 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 LSRQ86X29 649 aaPredicted RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 KIAA0319LQ8IZA0 1049 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 ZNF295-AS1Q8N0V1 137 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 LCORLQ8N3X6 602 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 LRRC71Q8N4P6 559 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 AADATQ8N5Z0 425 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 SEC62Q99442 399 aaKnown RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 ARHGAP39Q9C0H5 1083 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 DCP1AQ9NPI6 582 aaPredicted RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 PITPNM2Q9BZ72 1349 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 A0A1W2PRU2 124 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 RANBP6O60518 1105 aaKnown RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 NR2F1P10589 423 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 FGFR4P22455 802 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 ID4P47928 161 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 CPA2P48052 419 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 PRELPP51888 382 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 ATXN1P54253 815 aaKnown RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 NLRP5P59047 1200 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 ITKQ08881 620 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 GRM4Q14833 912 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 MTERF2Q49AM1 385 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 AKNAD1Q5T1N1 836 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 APOBEC3HQ6NTF7 200 aaKnown RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 ETFBKMTQ8IXQ9 262 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 GMCL1P1Q8NEA9 526 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 GPT2Q8TD30 523 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 USP13Q92995 863 aaPredicted RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 EDC3Q96F86 508 aaKnown RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 PHF20Q9BVI0 1012 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 RIOX1Q9H6W3 641 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 UPF2Q9HAU5 1272 aaKnown RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 IL17RBQ9NRM6 502 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 RTEL1Q9NZ71 1219 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 SYNJ2BP-COX16A0A087WUM0 186 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 CCDC66A2RUB6 948 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 DDX11L8A8MPP1 907 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 ENTPD3O75355 529 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 TBX18O95935 607 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 F13A1P00488 732 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 CCDC175P0C221 793 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 CCNFP41002 786 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 EFR3AQ14156 821 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 MMEL1Q495T6 779 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 PRR16Q569H4 304 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 METTL24Q5JXM2 366 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 NOL9Q5SY16 702 aaKnown RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 LLGL2Q6P1M3 1020 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 GLRX5Q86SX6 157 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 OR2C3Q8N628 320 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 CNBD1Q8NA66 436 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 TIGD1Q96MW7 591 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 SPZ1Q9BXG8 430 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 KRT23Q9C075 422 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 BOLA2Q9H3K6 86 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 ZSCAN16Q9H4T2 348 aaPredicted RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 CHORDC1Q9UHD1 332 aaPredicted RBP4.32□□□□□ -1.72
MCF2-203ENST00000370576 PFDN2Q9UHV9 154 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 ADAMTS5Q9UNA0 930 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 CYP46A1Q9Y6A2 500 aa4.32□□□□□ -1.72
MCF2-203ENST00000370576 SLC12A8A0AV02 714 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 WTIPA6NIX2 430 aaPredicted RBP4.31□□□□□ -1.72
MCF2-203ENST00000370576 P4HA2O15460 535 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 TSPAN3O60637 253 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 PPP6R2O75170 966 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 USP1O94782 785 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 LTFP02788 710 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 USP17L7P0C7H9 530 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 GUCY1A2P33402 732 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 CHKAP35790 457 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 CASP5P51878 434 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 GPR85P60893 370 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 GSTO1P78417 241 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 ST5P78524 1137 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 SNW1Q13573 536 aaKnown RBP4.31□□□□□ -1.72
MCF2-203ENST00000370576 GRIK5Q16478 980 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 POTEHQ6S545 545 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 ZC3H3Q8IXZ2 948 aaKnown RBP4.31□□□□□ -1.72
MCF2-203ENST00000370576 COLGALT2Q8IYK4 626 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 VWA5B2Q8N398 1253 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 HDAC7Q8WUI4 952 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 RNF26Q9BY78 433 aaPredicted RBP4.31□□□□□ -1.72
MCF2-203ENST00000370576 DONSONQ9NYP3 566 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 TMPRSS11EQ9UL52 423 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 ZNRF3Q9ULT6 936 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 PCDHB3Q9Y5E6 796 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 WDR33Q9C0J8 1336 aaKnown RBP4.31□□□□□ -1.72
MCF2-203ENST00000370576 TTLL13PA6NNM8 815 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 YDJCA8MPS7 323 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 PPFIA2O75334 1257 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 ZNF254O75437 659 aa4.31□□□□□ -1.72
MCF2-203ENST00000370576 PBLDP30039 288 aaPredicted RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms